List of all items
Structs
- catalog::builder::BuildSummary
- catalog::builder::ContigMetadata
- catalog::builder::DistributionBuilder
- catalog::builder::InputRecord
- catalog::builder::ReferenceBuilder
- catalog::hierarchical::CatalogIndex
- catalog::hierarchical::ContigLocation
- catalog::hierarchical::DistributionRef
- catalog::hierarchical::HierarchicalCatalog
- catalog::hierarchical::InferredAssembly
- catalog::index::CandidateFinder
- catalog::store::CatalogData
- catalog::store::ReferenceCatalog
- cli::Cli
- cli::ServeArgs
- cli::catalog::CatalogArgs
- cli::compare::CompareArgs
- cli::identify::IdentifyArgs
- cli::score::ScoreArgs
- core::assembly::AssemblyVersion
- core::assembly::FastaContig
- core::assembly::FastaDistribution
- core::assembly::HierarchicalAssembly
- core::assembly::PresenceCounts
- core::assembly::ReportContig
- core::contig::Contig
- core::header::QueryHeader
- core::reference::KnownReference
- core::reference::RoleCounts
- core::types::ReferenceId
- matching::diagnosis::ContigConflict
- matching::diagnosis::ContigMatch
- matching::diagnosis::MatchDiagnosis
- matching::diagnosis::RenamedContig
- matching::engine::MatchResult
- matching::engine::MatchingConfig
- matching::engine::MatchingEngine
- matching::engine::ScoringWeights
- matching::hierarchical_engine::HierarchicalMatchResult
- matching::hierarchical_engine::HierarchicalMatchingEngine
- matching::scoring::MatchScore
- parsing::ncbi_report::NcbiContigEntry
- web::server::AppState
- web::server::ErrorResponse
Enums
- catalog::builder::BuilderError
- catalog::builder::InputFormat
- catalog::store::CatalogError
- cli::Commands
- cli::OutputFormat
- cli::catalog::CatalogCommands
- cli::catalog::InputFormatArg
- cli::identify::InputFormat
- cli::identify::MissingContigHandling
- core::assembly::ContigMergeError
- core::assembly::ReportSource
- core::contig::SequenceRole
- core::types::Assembly
- core::types::Confidence
- core::types::MatchType
- core::types::NamingConvention
- core::types::ReferenceSource
- matching::diagnosis::ConflictType
- matching::diagnosis::Suggestion
- matching::scoring::ContigMatchType
- parsing::ncbi_report::PatchType
- parsing::sam::ParseError
- utils::validation::ValidationError
- web::format_detection::FileFormat
- web::format_detection::FormatError
- web::format_detection::ParseError
Functions
- catalog::builder::detect_assembly_from_name
- cli::catalog::run
- cli::compare::run
- cli::identify::run
- cli::score::run
- core::contig::detect_naming_convention
- parsing::dict::parse_dict_file
- parsing::dict::parse_dict_text
- parsing::fai::parse_fai_file
- parsing::fai::parse_fai_text
- parsing::fasta::is_fasta_file
- parsing::fasta::parse_fasta_file
- parsing::fasta::parse_fasta_file_with_md5
- parsing::ncbi_report::generate_ucsc_patch_name
- parsing::ncbi_report::parse_ncbi_report_text
- parsing::sam::parse_file
- parsing::sam::parse_header_text
- parsing::tsv::parse_tsv_file
- parsing::tsv::parse_tsv_text
- parsing::vcf::parse_vcf_file
- parsing::vcf::parse_vcf_header_text
- utils::validation::check_contig_limit
- utils::validation::compute_signature
- utils::validation::is_valid_md5
- utils::validation::normalize_md5
- utils::validation::validate_file_content
- utils::validation::validate_file_format
- utils::validation::validate_filename
- utils::validation::validate_upload
- web::format_detection::detect_format
- web::format_detection::parse_binary_file
- web::format_detection::parse_with_format
- web::server::create_router
- web::server::create_safe_error_response
- web::server::run