Enum MissingContigHandling 

pub enum MissingContigHandling {
    Warn,
    Strict,
    Silent,
}

How to handle references that have contigs missing from their FASTA (e.g., CHM13 where MT is in assembly report but uses standard rCRS mitochondria)

Variants

Warn

Show warnings when query has contigs that match a reference’s missing contigs

Strict

Treat missing contigs as errors that lower match confidence

Silent

Don’t mention missing contigs at all

Trait Implementations

impl Clone for MissingContigHandling

fn clone(&self) -> MissingContigHandling

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MissingContigHandling

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for MissingContigHandling

fn default() -> MissingContigHandling

Returns the “default value” for a type.

impl ValueEnum for MissingContigHandling

fn value_variants<'a>() -> &'a [Self]

All possible argument values, in display order.

fn to_possible_value<'a>(&self) -> Option<PossibleValue>

The canonical argument value.

fn from_str(input: &str, ignore_case: bool) -> Result<Self, String>

Parse an argument into Self.

impl Copy for MissingContigHandling