Enum FileFormat 

pub enum FileFormat {
    Sam,
    Bam,
    Cram,
    Dict,
    Vcf,
    NcbiReport,
    Tsv,
    Fai,
    Fasta,
    Auto,
}

Supported file formats for reference identification

Variants

Sam

SAM/BAM/CRAM files or plain text headers

Bam

BAM binary format

Cram

CRAM binary format

Dict

Picard sequence dictionary files

Vcf

VCF files with contig headers

NcbiReport

NCBI assembly report files

Tsv

TSV/CSV tabular files

Fai

FASTA index (.fai) files

Fasta

FASTA sequence files

Auto

Automatically detect format

Implementations

impl FileFormat

pub fn display_name(&self) -> &'static str

Get the display name for this format

Trait Implementations

impl Clone for FileFormat

fn clone(&self) -> FileFormat

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FileFormat

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for FileFormat

fn eq(&self, other: &FileFormat) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for FileFormat

impl StructuralPartialEq for FileFormat