Skip to main content

MatchDiagnosis

ref_solver::matching::diagnosis

Struct MatchDiagnosis

pub struct MatchDiagnosis {
    pub match_type: MatchType,
    pub exact_matches: Vec<ContigMatch>,
    pub renamed_matches: Vec<RenamedContig>,
    pub query_only: Vec<Contig>,
    pub reordered: bool,
    pub conflicts: Vec<ContigConflict>,
    pub suggestions: Vec<Suggestion>,
}

Expand description

Detailed diagnosis of differences between query and reference

Fields§

§match_type: MatchType

Type of match

§exact_matches: Vec<ContigMatch>

Query contigs that match reference exactly

§renamed_matches: Vec<RenamedContig>

Query contigs that match by MD5 but have different names

§query_only: Vec<Contig>

Query contigs with no match in reference

§reordered: bool

Contigs that are in a different order

§conflicts: Vec<ContigConflict>

Potential source conflicts (e.g., mito from different build)

§suggestions: Vec<Suggestion>

Suggested fixes

Implementations§

impl MatchDiagnosis

pub fn analyze(query: &QueryHeader, reference: &KnownReference) -> Self

Trait Implementations§

impl Clone for MatchDiagnosis

fn clone(&self) -> MatchDiagnosis

Returns a duplicate of the value. Read more

1.0.0 · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

impl Debug for MatchDiagnosis

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

impl Freeze for MatchDiagnosis

impl RefUnwindSafe for MatchDiagnosis

impl Send for MatchDiagnosis

impl Sync for MatchDiagnosis

impl Unpin for MatchDiagnosis

impl UnwindSafe for MatchDiagnosis

Blanket Implementations§

impl<T> Any for T
where T: 'static + ?Sized,

fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

impl<T> Borrow<T> for T
where T: ?Sized,

fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

impl<T> BorrowMut<T> for T
where T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

impl<T> CloneToUninit for T
where T: Clone,

unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

impl<T> From<T> for T

fn from(t: T) -> T

Returns the argument unchanged.

impl<T> FromRef<T> for T
where T: Clone,

fn from_ref(input: &T) -> T

Converts to this type from a reference to the input type.

impl<T> Instrument for T

fn instrument(self, span: Span) -> Instrumented<Self>

Instruments this type with the provided Span, returning an Instrumented wrapper. Read more

fn in_current_span(self) -> Instrumented<Self>

Instruments this type with the current Span, returning an Instrumented wrapper. Read more

impl<T, U> Into<U> for T
where U: From<T>,

fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

impl<T> Same for T

type Output = T

Should always be Self

impl<T> ToOwned for T
where T: Clone,

type Owned = T

The resulting type after obtaining ownership.

fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more

fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more

impl<T, U> TryFrom<U> for T
where U: Into<T>,

type Error = Infallible

The type returned in the event of a conversion error.

fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.

impl<V, T> VZip<V> for T
where V: MultiLane<T>,

fn vzip(self) -> V

impl<T> WithSubscriber for T

fn with_subscriber<S>(self, subscriber: S) -> WithDispatch<Self>
where S: Into<Dispatch>,

Attaches the provided Subscriber to this type, returning a WithDispatch wrapper. Read more

fn with_current_subscriber(self) -> WithDispatch<Self>

Attaches the current default Subscriber to this type, returning a WithDispatch wrapper. Read more

impl<A, B, T> HttpServerConnExec<A, B> for T
where B: Body,