Struct FastaContig 

pub struct FastaContig {
    pub name: String,
    pub length: u64,
    pub md5: String,
    pub sort_order: u32,
    pub report_contig_id: Option<u32>,
    pub aliases: Vec<String>,
}

A contig in a FASTA distribution

Fields

name: String

Contig name as it appears in the FASTA

length: u64

Sequence length

md5: String

MD5 checksum (required for matching)

sort_order: u32

Sort order (position in original file)

report_contig_id: Option<u32>

Link to ReportContig (None for decoy/HLA not in assembly report)

aliases: Vec<String>

Alternative names

Implementations

impl FastaContig

pub fn merge(&mut self, other: &FastaContig) -> Result<(), ContigMergeError>

Merge another contig’s metadata into this one

Used when building from multiple input files (e.g., dict + NCBI report)

Errors

Returns an error if:

• Names don’t match (ContigMergeError::NameMismatch)
• Lengths don’t match (ContigMergeError::LengthMismatch)
• Both contigs have different non-empty MD5 checksums (ContigMergeError::Md5Conflict)

Trait Implementations

impl Clone for FastaContig

fn clone(&self) -> FastaContig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for FastaContig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for FastaContig

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for FastaContig

fn eq(&self, other: &FastaContig) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for FastaContig

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for FastaContig