bio_tools 0.1.1

Install, run, and inspect computational biology and chemistry tools, e.g. AlphaFold, Boltz, RFdiffusion, and ProteinMPNN
Documentation 
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{
  "fields": [
    {
      "name": "job_name",
      "label": "Job name",
      "kind": "text",
      "default": "tlimmuno-demo",
      "required": false,
      "help": "",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": null,
      "accept": "",
      "task": ""
    },
    {
      "name": "peptide",
      "label": "Peptide",
      "kind": "text",
      "default": "AGFKGEQGPKGEPGPK",
      "required": true,
      "help": "13 to 21 residues, the range the class II model was trained on.",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": 21,
      "accept": "",
      "task": "single"
    },
    {
      "name": "mhc_allele",
      "label": "MHC class II allele",
      "kind": "text",
      "default": "DRB1_0101",
      "required": true,
      "help": "",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": 40,
      "accept": "",
      "task": "single"
    },
    {
      "name": "pairs",
      "label": "Peptide and allele pairs",
      "kind": "textarea",
      "default": "AGFKGEQGPKGEPGPK,DRB1_0101\nPKYVKQNTLKLATGMR,DRB1_0101\nGELIGTLNAAKVPADT,DRB1_0401",
      "required": true,
      "help": "One pair per line, as peptide,allele.",
      "options": [],
      "rows": 8,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": null,
      "accept": "",
      "task": "batch"
    }
  ],
  "tasks": [
    {
      "value": "single",
      "label": "One peptide"
    },
    {
      "value": "batch",
      "label": "Many peptides"
    }
  ]
}