bio_tools 0.1.1

Install, run, and inspect computational biology and chemistry tools, e.g. AlphaFold, Boltz, RFdiffusion, and ProteinMPNN
Documentation 
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{
  "fields": [
    {
      "name": "pdb",
      "label": "Antibody PDB",
      "kind": "file",
      "default": "HEADER    PASTE AN ANTIBODY PDB HERE",
      "required": true,
      "help": "",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": null,
      "accept": ".pdb,.ent",
      "task": ""
    },
    {
      "name": "designed_chains",
      "label": "Chains to design",
      "kind": "text",
      "default": "H L",
      "required": true,
      "help": "Space-separated chain IDs; heavy chain first.",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": null,
      "accept": "",
      "task": ""
    },
    {
      "name": "num_sequences",
      "label": "Number of sequences",
      "kind": "number",
      "default": 8,
      "required": false,
      "help": "",
      "options": [],
      "rows": null,
      "minimum": 1,
      "maximum": 1000,
      "step": null,
      "maxlength": null,
      "accept": "",
      "task": ""
    },
    {
      "name": "temperature",
      "label": "Sampling temperature",
      "kind": "number",
      "default": 0.2,
      "required": false,
      "help": "",
      "options": [],
      "rows": null,
      "minimum": 0.01,
      "maximum": 1.0,
      "step": 0.05,
      "maxlength": null,
      "accept": "",
      "task": ""
    },
    {
      "name": "omit_amino_acids",
      "label": "Amino acids to omit",
      "kind": "text",
      "default": "X",
      "required": false,
      "help": "One-letter amino-acid codes.",
      "options": [],
      "rows": null,
      "minimum": null,
      "maximum": null,
      "step": null,
      "maxlength": null,
      "accept": "",
      "task": ""
    }
  ],
  "tasks": []
}