Struct LocalWithLimitAligner

pub struct LocalWithLimitAligner { /* private fields */ }

Implementations

impl LocalWithLimitAligner

pub fn new(regulator: AlignmentRegulator, limit: u32) -> Self

Create a new Aligner

pub fn align<I: PatternIndex, S: SequenceStorage>( &mut self, query: &[u8], reference: &Reference<I, S>, sequence_buffer: &mut S::Buffer, sorted_target_indices: &[u32], ) -> QueryAlignment

Low-level alignment function

pub fn limit(&self) -> u32

pub fn set_limit(&mut self, limit: u32)

pub fn regulator(&self) -> &AlignmentRegulator

impl LocalWithLimitAligner

pub fn to_unlimited(self) -> LocalAligner

Trait Implementations

impl Clone for LocalWithLimitAligner

fn clone(&self) -> LocalWithLimitAligner

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.