sigalign_core::reference

Struct Reference

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pub struct Reference<I, S>
where
    I: PatternIndex,
    S: SequenceStorage,
{ /* private fields */ }
Expand description

A database for multiple target sequences.

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impl<I, S> Reference<I, S>
where I: PatternIndex, S: SequenceStorage,

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pub fn locate_pattern( &self, pattern: &[u8], sorted_target_indices: &[u32], ) -> Vec<PatternLocation>

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pub fn get_sequence_buffer(&self) -> S::Buffer

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pub fn fill_sequence_buffer(&self, target_index: u32, buffer: &mut S::Buffer)

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impl<I, S> Reference<I, S>
where I: PatternIndex, S: SequenceStorage,

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pub fn num_targets(&self) -> u32

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impl<I, S> Reference<I, S>
where I: PatternIndex, S: SequenceStorage + LabelStorage,

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pub fn label_of_target(&self, target_index: u32) -> Option<String>

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pub fn label_of_target_unchecked(&self, target_index: u32) -> String

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impl<I, S> Reference<I, S>
where I: PatternIndex, S: SequenceStorage + LabelRefStorage,

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pub fn label_ref_of_target(&self, target_index: u32) -> Option<&str>

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pub fn label_ref_of_target_unchecked(&self, target_index: u32) -> &str

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impl<I, S> Reference<I, S>
where I: PatternIndex, S: SequenceStorage,

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pub fn new( sequence_storage: S, pattern_index_option: I::Option, ) -> Result<Self, I::BuildError>

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pub fn get_sequence_storage(&self) -> &S

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pub fn get_pattern_index(&self) -> &I

Trait Implementations§

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impl<I, S> Clone for Reference<I, S>
where I: PatternIndex + Clone, S: SequenceStorage + Clone,

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fn clone(&self) -> Self

Returns a copy of the value. Read more
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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more
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impl<I, S> Debug for Reference<I, S>
where I: PatternIndex + Debug, S: SequenceStorage + Debug,

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more
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impl<I, S> EstimateSize for Reference<I, S>
where I: PatternIndex + EstimateSize, S: SequenceStorage + EstimateSize,

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fn serialized_size(&self) -> usize

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impl<I, S> Serialize for Reference<I, S>
where I: PatternIndex + Serialize, S: SequenceStorage + Serialize,

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fn save_to<W>(&self, writer: W) -> Result<(), Error>
where W: Write,

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fn load_from<R>(reader: R) -> Result<Self, Error>
where R: Read, Self: Sized,

Auto Trait Implementations§

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impl<I, S> Freeze for Reference<I, S>
where I: Freeze, S: Freeze,

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impl<I, S> RefUnwindSafe for Reference<I, S>
where I: RefUnwindSafe, S: RefUnwindSafe,

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impl<I, S> Send for Reference<I, S>
where I: Send, S: Send,

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impl<I, S> Sync for Reference<I, S>
where I: Sync, S: Sync,

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impl<I, S> Unpin for Reference<I, S>
where I: Unpin, S: Unpin,

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impl<I, S> UnwindSafe for Reference<I, S>
where I: UnwindSafe, S: UnwindSafe,

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more
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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more
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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more
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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)
Performs copy-assignment from self to dest. Read more
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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into<U> for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> ToOwned for T
where T: Clone,

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type Owned = T

The resulting type after obtaining ownership.
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fn to_owned(&self) -> T

Creates owned data from borrowed data, usually by cloning. Read more
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fn clone_into(&self, target: &mut T)

Uses borrowed data to replace owned data, usually by cloning. Read more
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impl<T, U> TryFrom<U> for T
where U: Into<T>,

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type Error = Infallible

The type returned in the event of a conversion error.
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fn try_from(value: U) -> Result<T, <T as TryFrom<U>>::Error>

Performs the conversion.
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impl<T, U> TryInto<U> for T
where U: TryFrom<T>,

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type Error = <U as TryFrom<T>>::Error

The type returned in the event of a conversion error.
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fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Performs the conversion.