List of all items

Structs

• bam::AsyncReader
• bam::AsyncWriter
• bam::Record
• bam::async::io::Reader
• bam::async::io::Writer
• bam::bai::AsyncReader
• bam::bai::AsyncWriter
• bam::bai::Reader
• bam::bai::Writer
• bam::bai::async::Reader
• bam::bai::async::Writer
• bam::io::IndexedReader
• bam::io::Reader
• bam::io::Writer
• bam::io::indexed_reader::Builder
• bam::io::indexed_reader::IndexedReader
• bam::io::reader::Builder
• bam::io::reader::Query
• bam::io::reader::Reader
• bam::io::reader::RecordBufs
• bam::io::reader::Records
• bam::io::writer::Builder
• bam::io::writer::Writer
• bam::record::Cigar
• bam::record::Data
• bam::record::QualityScores
• bam::record::Record
• bam::record::Sequence
• bam::record::data::Data
• bam::record::data::field::value::array::Values
• bcf::AsyncReader
• bcf::AsyncWriter
• bcf::Record
• bcf::async::io::Reader
• bcf::async::io::Writer
• bcf::io::IndexedReader
• bcf::io::Reader
• bcf::io::Writer
• bcf::io::indexed_reader::Builder
• bcf::io::indexed_reader::IndexedReader
• bcf::io::reader::Builder
• bcf::io::reader::Query
• bcf::io::reader::Reader
• bcf::io::reader::RecordBufs
• bcf::io::writer::Builder
• bcf::io::writer::Writer
• bcf::record::AlternateBases
• bcf::record::Filters
• bcf::record::Ids
• bcf::record::Info
• bcf::record::Record
• bcf::record::ReferenceBases
• bcf::record::Samples
• bcf::record::samples::Sample
• bcf::record::samples::Samples
• bcf::record::samples::Series
• bcf::record::samples::series::Series
• bcf::record::samples::series::value::Genotype
• bed::Reader
• bed::Record
• bed::Writer
• bed::feature::RecordBuf
• bed::feature::record_buf::Builder
• bed::feature::record_buf::OtherFields
• bed::feature::record_buf::RecordBuf
• bed::feature::record_buf::builder::Builder
• bed::feature::record_buf::other_fields::OtherFields
• bed::io::Reader
• bed::io::Writer
• bed::io::reader::Builder
• bed::io::reader::Reader
• bed::io::writer::Builder
• bed::io::writer::Writer
• bgzf::AsyncReader
• bgzf::AsyncWriter
• bgzf::IndexedReader
• bgzf::MultithreadedReader
• bgzf::MultithreadedWriter
• bgzf::Reader
• bgzf::VirtualPosition
• bgzf::Writer
• bgzf::async::Reader
• bgzf::async::Writer
• bgzf::async::reader::Builder
• bgzf::async::reader::Reader
• bgzf::async::writer::Builder
• bgzf::async::writer::Writer
• bgzf::gzi::AsyncReader
• bgzf::gzi::Reader
• bgzf::gzi::async::Reader
• bgzf::indexed_reader::Builder
• bgzf::indexed_reader::IndexedReader
• bgzf::multithreaded_writer::Builder
• bgzf::multithreaded_writer::MultithreadedWriter
• bgzf::reader::Builder
• bgzf::reader::Reader
• bgzf::virtual_position::VirtualPosition
• bgzf::writer::Builder
• bgzf::writer::CompressionLevel
• bgzf::writer::Writer
• core::Position
• core::Region
• core::position::Position
• core::region::Interval
• core::region::Region
• core::region::interval::Interval
• cram::AsyncReader
• cram::AsyncWriter
• cram::DataContainer
• cram::FileDefinition
• cram::Record
• cram::async::io::Reader
• cram::async::io::Writer
• cram::async::io::reader::Builder
• cram::async::io::reader::Reader
• cram::async::io::writer::Builder
• cram::async::io::writer::Writer
• cram::codecs::aac::Flags
• cram::codecs::rans_nx16::Flags
• cram::crai::AsyncReader
• cram::crai::AsyncWriter
• cram::crai::Reader
• cram::crai::Record
• cram::crai::Writer
• cram::crai::async::Reader
• cram::crai::async::Writer
• cram::crai::record::Record
• cram::data_container::BlockContentEncoderMap
• cram::data_container::CompressionHeader
• cram::data_container::DataContainer
• cram::data_container::Slice
• cram::data_container::block_content_encoder_map::BlockContentEncoderMap
• cram::data_container::block_content_encoder_map::Builder
• cram::data_container::compression_header::CompressionHeader
• cram::data_container::compression_header::preservation_map::tag_ids_dictionary::Key
• cram::file_definition::FileDefinition
• cram::file_definition::Version
• cram::io::IndexedReader
• cram::io::Reader
• cram::io::Writer
• cram::io::indexed_reader::Builder
• cram::io::indexed_reader::IndexedReader
• cram::io::reader::Builder
• cram::io::reader::Query
• cram::io::reader::Reader
• cram::io::reader::Records
• cram::io::writer::Builder
• cram::io::writer::Writer
• cram::record::Builder
• cram::record::Features
• cram::record::Flags
• cram::record::NextMateFlags
• cram::record::Record
• cram::record::feature::code::TryFromByteError
• csi::AsyncReader
• csi::AsyncWriter
• csi::Reader
• csi::Writer
• csi::async::Reader
• csi::async::Writer
• csi::binning_index::Index
• csi::binning_index::Indexer
• csi::binning_index::index::Builder
• csi::binning_index::index::Header
• csi::binning_index::index::Index
• csi::binning_index::index::ReferenceSequence
• csi::binning_index::index::header::Builder
• csi::binning_index::index::header::Header
• csi::binning_index::index::header::format::coordinate_system::TryFromIntError
• csi::binning_index::index::reference_sequence::Bin
• csi::binning_index::index::reference_sequence::Metadata
• csi::binning_index::index::reference_sequence::ReferenceSequence
• csi::binning_index::index::reference_sequence::bin::Bin
• csi::binning_index::index::reference_sequence::bin::Chunk
• csi::io::FilterByRegion
• csi::io::IndexedReader
• csi::io::IndexedRecords
• csi::io::Query
• csi::reader::Reader
• fasta::AsyncReader
• fasta::IndexedReader
• fasta::Reader
• fasta::Record
• fasta::Repository
• fasta::Writer
• fasta::async::Reader
• fasta::async::io::Reader
• fasta::fai::AsyncReader
• fasta::fai::Index
• fasta::fai::Reader
• fasta::fai::Record
• fasta::fai::Writer
• fasta::io::IndexedReader
• fasta::io::Indexer
• fasta::io::Reader
• fasta::io::Writer
• fasta::io::indexed_reader::Builder
• fasta::io::indexed_reader::IndexedReader
• fasta::io::reader::Builder
• fasta::io::reader::Reader
• fasta::io::reader::Records
• fasta::io::reader::sequence::Reader
• fasta::io::writer::Builder
• fasta::io::writer::Writer
• fasta::record::Definition
• fasta::record::Record
• fasta::record::Sequence
• fasta::record::definition::Definition
• fasta::record::sequence::Complement
• fasta::record::sequence::Sequence
• fasta::record::sequence::complement::Complement
• fasta::record::sequence::complement::ComplementError
• fasta::repository::Repository
• fasta::repository::adapters::Empty
• fasta::repository::adapters::IndexedReader
• fastq::AsyncReader
• fastq::AsyncWriter
• fastq::Indexer
• fastq::Reader
• fastq::Record
• fastq::async::io::Reader
• fastq::async::io::Writer
• fastq::fai::Reader
• fastq::fai::Record
• fastq::fai::Writer
• fastq::io::Indexer
• fastq::io::Reader
• fastq::io::Writer
• fastq::io::reader::Reader
• fastq::io::reader::Records
• fastq::io::writer::Builder
• fastq::io::writer::Writer
• fastq::record::Definition
• fastq::record::Record
• gff::AsyncReader
• gff::Reader
• gff::Record
• gff::Writer
• gff::async::Reader
• gff::async::io::Reader
• gff::directive::GenomeBuild
• gff::directive::GffVersion
• gff::directive::SequenceRegion
• gff::directive::genome_build::GenomeBuild
• gff::directive::gff_version::GffVersion
• gff::directive::name::Other
• gff::directive::name::other::Other
• gff::directive::sequence_region::SequenceRegion
• gff::io::Reader
• gff::io::Writer
• gff::lazy::Record
• gff::lazy::record::Attributes
• gff::lazy::record::Record
• gff::lazy::record::attributes::Attributes
• gff::record::Attributes
• gff::record::Builder
• gff::record::Record
• gff::record::attributes::Attributes
• gtf::Reader
• gtf::Record
• gtf::Writer
• gtf::io::Reader
• gtf::io::Writer
• gtf::record::Attributes
• gtf::record::Builder
• gtf::record::Frame
• gtf::record::Record
• gtf::record::attributes::Attributes
• gtf::record::attributes::Entry
• gtf::record::attributes::entry::Entry
• gtf::record::frame::Frame
• htsget::Client
• htsget::Response
• htsget::reads::Builder
• htsget::response::Error
• htsget::response::Response
• htsget::variants::Builder
• refget::Client
• refget::Sequence
• refget::sequence::Builder
• refget::sequence::Metadata
• refget::sequence::Sequence
• refget::sequence::Service
• sam::AsyncReader
• sam::AsyncWriter
• sam::Header
• sam::Record
• sam::alignment::RecordBuf
• sam::alignment::record::Flags
• sam::alignment::record::MappingQuality
• sam::alignment::record::cigar::Op
• sam::alignment::record::cigar::op::Op
• sam::alignment::record::data::field::Tag
• sam::alignment::record::data::field::tag::Tag
• sam::alignment::record::mapping_quality::MappingQuality
• sam::alignment::record_buf::Builder
• sam::alignment::record_buf::Cigar
• sam::alignment::record_buf::Data
• sam::alignment::record_buf::QualityScores
• sam::alignment::record_buf::RecordBuf
• sam::alignment::record_buf::Sequence
• sam::alignment::record_buf::data::Data
• sam::async::io::Reader
• sam::async::io::Writer
• sam::header::Builder
• sam::header::Header
• sam::header::Parser
• sam::header::Programs
• sam::header::record::value::Map
• sam::header::record::value::map::Builder
• sam::header::record::value::map::Header
• sam::header::record::value::map::Map
• sam::header::record::value::map::Program
• sam::header::record::value::map::ReadGroup
• sam::header::record::value::map::ReferenceSequence
• sam::header::record::value::map::builder::Builder
• sam::header::record::value::map::header::Header
• sam::header::record::value::map::header::Version
• sam::header::record::value::map::header::version::Version
• sam::header::record::value::map::program::Program
• sam::header::record::value::map::read_group::ReadGroup
• sam::header::record::value::map::reference_sequence::Md5Checksum
• sam::header::record::value::map::reference_sequence::ReferenceSequence
• sam::header::record::value::map::reference_sequence::md5_checksum::Md5Checksum
• sam::header::record::value::map::tag::Other
• sam::io::IndexedReader
• sam::io::Reader
• sam::io::Writer
• sam::io::indexed_reader::Builder
• sam::io::indexed_reader::IndexedReader
• sam::io::reader::Builder
• sam::io::reader::Reader
• sam::io::reader::RecordBufs
• sam::io::writer::Builder
• sam::io::writer::Writer
• sam::record::Cigar
• sam::record::Data
• sam::record::QualityScores
• sam::record::Record
• sam::record::Sequence
• sam::record::data::Data
• sam::record::data::field::value::BaseModifications
• sam::record::data::field::value::base_modifications::BaseModifications
• sam::record::data::field::value::base_modifications::Group
• sam::record::data::field::value::base_modifications::group::Group
• tabix::AsyncReader
• tabix::AsyncWriter
• tabix::Reader
• tabix::Writer
• tabix::async::Reader
• tabix::async::Writer
• tabix::index::Indexer
• tabix::io::indexed_reader::Builder
• vcf::AsyncReader
• vcf::AsyncWriter
• vcf::Header
• vcf::Record
• vcf::async::io::Reader
• vcf::async::io::Writer
• vcf::header::Builder
• vcf::header::FileFormat
• vcf::header::Header
• vcf::header::Parser
• vcf::header::StringMaps
• vcf::header::file_format::FileFormat
• vcf::header::parser::Builder
• vcf::header::parser::Parser
• vcf::header::record::key::Other
• vcf::header::record::key::other::Other
• vcf::header::record::value::Map
• vcf::header::record::value::map::AlternativeAllele
• vcf::header::record::value::map::Builder
• vcf::header::record::value::map::Contig
• vcf::header::record::value::map::Filter
• vcf::header::record::value::map::Format
• vcf::header::record::value::map::Info
• vcf::header::record::value::map::Map
• vcf::header::record::value::map::Other
• vcf::header::record::value::map::alternative_allele::AlternativeAllele
• vcf::header::record::value::map::contig::Contig
• vcf::header::record::value::map::filter::Filter
• vcf::header::record::value::map::format::Format
• vcf::header::record::value::map::info::Info
• vcf::header::record::value::map::other::Other
• vcf::header::string_maps::StringMap
• vcf::header::string_maps::StringMaps
• vcf::io::IndexedReader
• vcf::io::Reader
• vcf::io::Writer
• vcf::io::indexed_reader::Builder
• vcf::io::indexed_reader::IndexedReader
• vcf::io::reader::Builder
• vcf::io::reader::Query
• vcf::io::reader::Reader
• vcf::io::reader::RecordBufs
• vcf::io::writer::Builder
• vcf::io::writer::Writer
• vcf::record::AlternateBases
• vcf::record::Filters
• vcf::record::Ids
• vcf::record::Info
• vcf::record::Record
• vcf::record::Samples
• vcf::record::samples::Keys
• vcf::record::samples::Sample
• vcf::record::samples::Samples
• vcf::record::samples::Series
• vcf::record::samples::series::Series
• vcf::record::samples::series::value::Genotype
• vcf::variant::RecordBuf
• vcf::variant::record_buf::AlternateBases
• vcf::variant::record_buf::Builder
• vcf::variant::record_buf::Filters
• vcf::variant::record_buf::Ids
• vcf::variant::record_buf::Info
• vcf::variant::record_buf::RecordBuf
• vcf::variant::record_buf::Samples
• vcf::variant::record_buf::builder::Builder
• vcf::variant::record_buf::ids::Ids
• vcf::variant::record_buf::info::Info
• vcf::variant::record_buf::samples::Keys
• vcf::variant::record_buf::samples::Sample
• vcf::variant::record_buf::samples::Samples
• vcf::variant::record_buf::samples::Series
• vcf::variant::record_buf::samples::keys::Keys
• vcf::variant::record_buf::samples::sample::Sample
• vcf::variant::record_buf::samples::sample::value::Genotype
• vcf::variant::record_buf::samples::sample::value::genotype::Allele
• vcf::variant::record_buf::samples::sample::value::genotype::Genotype
• vcf::variant::record_buf::samples::sample::value::genotype::allele::Allele

Enums

• bcf::io::CompressionMethod
• bed::feature::record::Strand
• bed::feature::record::other_fields::Value
• bed::feature::record_buf::other_fields::Value
• bgzf::virtual_position::TryFromU64U16TupleError
• core::region::ParseError
• core::region::interval::ParseError
• cram::codecs::Encoder
• cram::codecs::rans_4x8::Order
• cram::crai::record::Field
• cram::crai::record::ParseError
• cram::data_container::compression_header::data_series_encoding_map::DataSeries
• cram::record::Feature
• cram::record::feature::Code
• cram::record::feature::Feature
• cram::record::feature::code::Code
• cram::record::feature::substitution::Base
• cram::record::feature::substitution::Value
• csi::binning_index::index::header::Format
• csi::binning_index::index::header::format::CoordinateSystem
• csi::binning_index::index::header::format::Format
• csi::binning_index::index::header::format::TryFromIntError
• csi::binning_index::index::header::format::coordinate_system::CoordinateSystem
• csi::reader::index::ReadError
• fasta::io::BufReader
• fasta::record::definition::ParseError
• gff::Directive
• gff::Line
• gff::directive::Directive
• gff::directive::ParseError
• gff::directive::genome_build::ParseError
• gff::directive::gff_version::ParseError
• gff::directive::name::other::ParseError
• gff::directive::sequence_region::ParseError
• gff::lazy::Line
• gff::lazy::record::attributes::field::Value
• gff::line::Line
• gff::line::ParseError
• gff::record::Field
• gff::record::ParseError
• gff::record::Phase
• gff::record::Strand
• gff::record::attributes::ParseError
• gff::record::attributes::field::ParseError
• gff::record::attributes::field::Value
• gff::record::attributes::field::value::ParseError
• gff::record::attributes::field::value::Value
• gff::record::strand::ParseError
• gff::record::strand::Strand
• gtf::Line
• gtf::line::Line
• gtf::line::ParseError
• gtf::record::ParseError
• gtf::record::Strand
• gtf::record::attributes::ParseError
• gtf::record::attributes::entry::ParseError
• gtf::record::frame::ParseError
• gtf::record::strand::ParseError
• gtf::record::strand::Strand
• htsget::Error
• htsget::Format
• htsget::reads::Format
• htsget::variants::Format
• refget::Error
• sam::alignment::record::cigar::op::Kind
• sam::alignment::record::cigar::op::kind::Kind
• sam::alignment::record::data::field::Type
• sam::alignment::record::data::field::Value
• sam::alignment::record::data::field::value::Array
• sam::alignment::record::data::field::value::Value
• sam::alignment::record::data::field::value::array::Array
• sam::alignment::record::data::field::value::array::Subtype
• sam::alignment::record::mapping_quality::TryFromIntError
• sam::alignment::record_buf::data::field::Value
• sam::alignment::record_buf::data::field::value::Array
• sam::alignment::record_buf::data::field::value::Value
• sam::header::ParseError
• sam::header::Record
• sam::header::record::Kind
• sam::header::record::Record
• sam::header::record::kind::Kind
• sam::header::record::kind::ParseError
• sam::header::record::value::map::Tag
• sam::header::record::value::map::builder::BuildError
• sam::header::record::value::map::header::tag::Standard
• sam::header::record::value::map::header::version::ParseError
• sam::header::record::value::map::program::tag::Standard
• sam::header::record::value::map::read_group::tag::Standard
• sam::header::record::value::map::reference_sequence::md5_checksum::ParseError
• sam::header::record::value::map::reference_sequence::tag::Standard
• sam::header::record::value::map::tag::ParseError
• sam::header::record::value::map::tag::Tag
• sam::io::CompressionMethod
• sam::record::data::field::value::base_modifications::group::Modification
• sam::record::data::field::value::base_modifications::group::Status
• sam::record::data::field::value::base_modifications::group::Strand
• sam::record::data::field::value::base_modifications::group::UnmodifiedBase
• sam::record::data::field::value::base_modifications::group::modification::Modification
• sam::record::data::field::value::base_modifications::group::modification::ParseError
• vcf::header::ParseError
• vcf::header::Record
• vcf::header::parser::Entry
• vcf::header::parser::FileFormatOption
• vcf::header::parser::ParseError
• vcf::header::record::Key
• vcf::header::record::Record
• vcf::header::record::Value
• vcf::header::record::key::Key
• vcf::header::record::key::Standard
• vcf::header::record::key::other::ParseError
• vcf::header::record::value::Collection
• vcf::header::record::value::Value
• vcf::header::record::value::collection::AddError
• vcf::header::record::value::collection::Collection
• vcf::header::record::value::map::format::Number
• vcf::header::record::value::map::format::Type
• vcf::header::record::value::map::info::Number
• vcf::header::record::value::map::info::Type
• vcf::io::CompressionMethod
• vcf::io::reader::record_buf::ParseError
• vcf::variant::record::info::field::Value
• vcf::variant::record::info::field::value::Array
• vcf::variant::record::info::field::value::Value
• vcf::variant::record::info::field::value::array::Array
• vcf::variant::record::samples::series::Value
• vcf::variant::record::samples::series::value::Array
• vcf::variant::record::samples::series::value::Value
• vcf::variant::record::samples::series::value::array::Array
• vcf::variant::record::samples::series::value::genotype::Phasing
• vcf::variant::record_buf::info::field::Value
• vcf::variant::record_buf::info::field::value::Array
• vcf::variant::record_buf::info::field::value::Value
• vcf::variant::record_buf::samples::sample::Value
• vcf::variant::record_buf::samples::sample::value::Array
• vcf::variant::record_buf::samples::sample::value::Value
• vcf::variant::record_buf::samples::sample::value::genotype::ParseError
• vcf::variant::record_buf::samples::sample::value::genotype::allele::ParseError

Traits

• bed::feature::Record
• bed::feature::record::OtherFields
• bed::feature::record::Record
• bed::feature::record::other_fields::OtherFields
• bgzf::io::BufRead
• bgzf::io::Read
• bgzf::io::Seek
• core::position::SequenceIndex
• csi::BinningIndex
• csi::binning_index::BinningIndex
• csi::binning_index::ReferenceSequence
• csi::binning_index::index::reference_sequence::Index
• csi::binning_index::index::reference_sequence::index::Index
• csi::io::IndexedRecord
• fasta::repository::Adapter
• fasta::sequence::Record
• fasta::sequence::record::Record
• sam::alignment::Record
• sam::alignment::io::Read
• sam::alignment::io::Write
• sam::alignment::record::Cigar
• sam::alignment::record::Data
• sam::alignment::record::QualityScores
• sam::alignment::record::Record
• sam::alignment::record::Sequence
• sam::alignment::record::cigar::Cigar
• sam::alignment::record::data::Data
• sam::alignment::record::data::field::value::array::Values
• sam::header::record::value::map::Inner
• sam::header::record::value::map::builder::Inner
• sam::header::record::value::map::tag::Standard
• vcf::header::record::value::map::Described
• vcf::header::record::value::map::Indexed
• vcf::header::record::value::map::Inner
• vcf::header::record::value::map::Typed
• vcf::variant::Record
• vcf::variant::io::Read
• vcf::variant::io::Write
• vcf::variant::record::AlternateBases
• vcf::variant::record::Filters
• vcf::variant::record::Ids
• vcf::variant::record::Info
• vcf::variant::record::Record
• vcf::variant::record::ReferenceBases
• vcf::variant::record::Samples
• vcf::variant::record::info::Info
• vcf::variant::record::info::field::value::array::Values
• vcf::variant::record::samples::Sample
• vcf::variant::record::samples::Samples
• vcf::variant::record::samples::Series
• vcf::variant::record::samples::series::Series
• vcf::variant::record::samples::series::value::Genotype
• vcf::variant::record::samples::series::value::array::Values
• vcf::variant::record::samples::series::value::genotype::Genotype

Functions

• bam::bai::async::read
• bam::bai::async::write
• bam::bai::read
• bam::bai::write
• bgzf::gzi::async::read
• bgzf::gzi::read
• cram::crai::async::read
• cram::crai::async::write
• cram::crai::read
• cram::crai::write
• cram::index
• cram::record::resolve::resolve_quality_scores
• csi::async::read
• csi::async::write
• csi::binning_index::merge_chunks
• csi::binning_index::optimize_chunks
• csi::read
• csi::write
• fasta::fai::read
• fasta::index
• fasta::io::index
• fastq::index
• fastq::io::index
• sam::io::writer::record::write_cigar
• tabix::async::read
• tabix::async::write
• tabix::read
• tabix::write
• vcf::header::parser::parse_record
• vcf::index

Type Aliases

• bam::bai::Index
• bgzf::gzi::Index
• core::position::ParseError
• core::position::TryFromIntError
• cram::crai::Index
• csi::Index
• csi::binning_index::index::header::ReferenceSequenceNames
• csi::binning_index::index::reference_sequence::index::BinnedIndex
• csi::binning_index::index::reference_sequence::index::LinearIndex
• fastq::fai::Index
• gff::record::attributes::field::Tag
• gff::record::attributes::field::tag::Tag
• sam::header::ReadGroups
• sam::header::ReferenceSequences
• sam::header::record::value::map::header::Tag
• sam::header::record::value::map::header::tag::Tag
• tabix::Index
• vcf::header::AlternativeAlleles
• vcf::header::Contigs
• vcf::header::Filters
• vcf::header::Formats
• vcf::header::Infos
• vcf::header::OtherRecords
• vcf::header::SampleNames
• vcf::header::record::value::map::alternative_allele::Tag
• vcf::header::record::value::map::contig::Tag
• vcf::header::record::value::map::filter::Tag
• vcf::header::record::value::map::format::Tag
• vcf::header::record::value::map::info::Tag
• vcf::header::record::value::map::other::Tag
• vcf::header::string_maps::ContigStringMap
• vcf::header::string_maps::StringStringMap

Constants

• gff::record::attributes::field::tag::ALIAS
• gff::record::attributes::field::tag::DBXREF
• gff::record::attributes::field::tag::DERIVES_FROM
• gff::record::attributes::field::tag::GAP
• gff::record::attributes::field::tag::ID
• gff::record::attributes::field::tag::IS_CIRCULAR
• gff::record::attributes::field::tag::NAME
• gff::record::attributes::field::tag::NOTE
• gff::record::attributes::field::tag::ONTOLOGY_TERM
• gff::record::attributes::field::tag::PARENT
• gff::record::attributes::field::tag::TARGET
• sam::header::record::value::map::header::group_order::NONE
• sam::header::record::value::map::header::group_order::QUERY
• sam::header::record::value::map::header::group_order::REFERENCE
• sam::header::record::value::map::header::sort_order::COORDINATE
• sam::header::record::value::map::header::sort_order::QUERY_NAME
• sam::header::record::value::map::header::sort_order::UNKNOWN
• sam::header::record::value::map::header::sort_order::UNSORTED
• sam::header::record::value::map::header::tag::GROUP_ORDER
• sam::header::record::value::map::header::tag::SORT_ORDER
• sam::header::record::value::map::header::tag::SUBSORT_ORDER
• sam::header::record::value::map::program::tag::COMMAND_LINE
• sam::header::record::value::map::program::tag::DESCRIPTION
• sam::header::record::value::map::program::tag::NAME
• sam::header::record::value::map::program::tag::PREVIOUS_PROGRAM_ID
• sam::header::record::value::map::program::tag::VERSION
• sam::header::record::value::map::read_group::platform::CAPILLARY
• sam::header::record::value::map::read_group::platform::DNB_SEQ
• sam::header::record::value::map::read_group::platform::ELEMENT
• sam::header::record::value::map::read_group::platform::HELICOS
• sam::header::record::value::map::read_group::platform::ILLUMINA
• sam::header::record::value::map::read_group::platform::ION_TORRENT
• sam::header::record::value::map::read_group::platform::LS454
• sam::header::record::value::map::read_group::platform::ONT
• sam::header::record::value::map::read_group::platform::PAC_BIO
• sam::header::record::value::map::read_group::platform::SINGULAR
• sam::header::record::value::map::read_group::platform::SOLID
• sam::header::record::value::map::read_group::platform::ULTIMA
• sam::header::record::value::map::read_group::tag::BARCODE
• sam::header::record::value::map::read_group::tag::DESCRIPTION
• sam::header::record::value::map::read_group::tag::FLOW_ORDER
• sam::header::record::value::map::read_group::tag::KEY_SEQUENCE
• sam::header::record::value::map::read_group::tag::LIBRARY
• sam::header::record::value::map::read_group::tag::PLATFORM
• sam::header::record::value::map::read_group::tag::PLATFORM_MODEL
• sam::header::record::value::map::read_group::tag::PLATFORM_UNIT
• sam::header::record::value::map::read_group::tag::PREDICTED_MEDIAN_INSERT_SIZE
• sam::header::record::value::map::read_group::tag::PRODUCED_AT
• sam::header::record::value::map::read_group::tag::PROGRAM
• sam::header::record::value::map::read_group::tag::SAMPLE
• sam::header::record::value::map::read_group::tag::SEQUENCING_CENTER
• sam::header::record::value::map::reference_sequence::molecule_topology::CIRCULAR
• sam::header::record::value::map::reference_sequence::molecule_topology::LINEAR
• sam::header::record::value::map::reference_sequence::tag::ALTERNATIVE_LOCUS
• sam::header::record::value::map::reference_sequence::tag::ALTERNATIVE_NAMES
• sam::header::record::value::map::reference_sequence::tag::ASSEMBLY_ID
• sam::header::record::value::map::reference_sequence::tag::DESCRIPTION
• sam::header::record::value::map::reference_sequence::tag::MD5_CHECKSUM
• sam::header::record::value::map::reference_sequence::tag::MOLECULE_TOPOLOGY
• sam::header::record::value::map::reference_sequence::tag::SPECIES
• sam::header::record::value::map::reference_sequence::tag::URI
• sam::record::data::field::value::base_modifications::group::modification::EIGHT_OXOGUANINE
• sam::record::data::field::value::base_modifications::group::modification::FIVE_CARBOXYLCYTOSINE
• sam::record::data::field::value::base_modifications::group::modification::FIVE_CARBOXYLURACIL
• sam::record::data::field::value::base_modifications::group::modification::FIVE_FORMYLCYTOSINE
• sam::record::data::field::value::base_modifications::group::modification::FIVE_FORMYLURACIL
• sam::record::data::field::value::base_modifications::group::modification::FIVE_HYDROXYMETHYLCYTOSINE
• sam::record::data::field::value::base_modifications::group::modification::FIVE_HYDROXYMETHYLURACIL
• sam::record::data::field::value::base_modifications::group::modification::FIVE_METHYLCYTOSINE
• sam::record::data::field::value::base_modifications::group::modification::SIX_METHYLADENINE
• sam::record::data::field::value::base_modifications::group::modification::XANTHOSINE
• vcf::header::record::key::ALTERNATIVE_ALLELE
• vcf::header::record::key::CONTIG
• vcf::header::record::key::FILE_FORMAT
• vcf::header::record::key::FILTER
• vcf::header::record::key::FORMAT
• vcf::header::record::key::INFO
• vcf::variant::record::info::field::key::ADJACENT_COPY_NUMBER
• vcf::variant::record::info::field::key::ADJACENT_COPY_NUMBER_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::ADJACENT_READ_DEPTHS
• vcf::variant::record::info::field::key::ALLELE_COUNT
• vcf::variant::record::info::field::key::ALLELE_FREQUENCIES
• vcf::variant::record::info::field::key::ANCESTRAL_ALLELE
• vcf::variant::record::info::field::key::BASE_QUALITY
• vcf::variant::record::info::field::key::BREAKEND_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::BREAKEND_COPY_NUMBER
• vcf::variant::record::info::field::key::BREAKEND_EVENT_ID
• vcf::variant::record::info::field::key::BREAKPOINT_IDS
• vcf::variant::record::info::field::key::CIGAR
• vcf::variant::record::info::field::key::COPY_NUMBER_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::DBV_ID
• vcf::variant::record::info::field::key::DB_RIP_ID
• vcf::variant::record::info::field::key::DB_VAR_ID
• vcf::variant::record::info::field::key::END_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::END_POSITION
• vcf::variant::record::info::field::key::EVENT_TYPE
• vcf::variant::record::info::field::key::FORWARD_STRAND_READ_DEPTHS
• vcf::variant::record::info::field::key::IS_IMPRECISE
• vcf::variant::record::info::field::key::IS_IN_1000_GENOMES
• vcf::variant::record::info::field::key::IS_IN_DB_SNP
• vcf::variant::record::info::field::key::IS_IN_HAP_MAP_2
• vcf::variant::record::info::field::key::IS_IN_HAP_MAP_3
• vcf::variant::record::info::field::key::IS_NOVEL
• vcf::variant::record::info::field::key::IS_SOMATIC_MUTATION
• vcf::variant::record::info::field::key::IS_VALIDATED
• vcf::variant::record::info::field::key::MAPPING_QUALITY
• vcf::variant::record::info::field::key::MATE_BREAKEND_IDS
• vcf::variant::record::info::field::key::MICROHOMOLOGY_LENGTHS
• vcf::variant::record::info::field::key::MICROHOMOLOGY_SEQUENCES
• vcf::variant::record::info::field::key::MOBILE_ELEMENT_INFO
• vcf::variant::record::info::field::key::MOBILE_ELEMENT_TRANSDUCTION_INFO
• vcf::variant::record::info::field::key::PARTNER_BREAKEND_ID
• vcf::variant::record::info::field::key::POSITION_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::REPEAT_UNIT_BASE_COUNTS
• vcf::variant::record::info::field::key::REPEAT_UNIT_COUNTS
• vcf::variant::record::info::field::key::REPEAT_UNIT_COUNT_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::REPEAT_UNIT_LENGTHS
• vcf::variant::record::info::field::key::REPEAT_UNIT_SEQUENCES
• vcf::variant::record::info::field::key::REVERSE_STRAND_READ_DEPTHS
• vcf::variant::record::info::field::key::SAMPLES_WITH_DATA_COUNT
• vcf::variant::record::info::field::key::STRAND_BIAS
• vcf::variant::record::info::field::key::SV_CLAIM
• vcf::variant::record::info::field::key::SV_LENGTHS
• vcf::variant::record::info::field::key::SV_TYPE
• vcf::variant::record::info::field::key::TOTAL_ALLELE_COUNT
• vcf::variant::record::info::field::key::TOTAL_DEPTH
• vcf::variant::record::info::field::key::TOTAL_READ_DEPTHS
• vcf::variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNTS
• vcf::variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_BASE_COUNT_CONFIDENCE_INTERVALS
• vcf::variant::record::info::field::key::TOTAL_REPEAT_SEQUENCE_COUNTS
• vcf::variant::record::info::field::key::ZERO_MAPPING_QUALITY_COUNT
• vcf::variant::record::samples::keys::key::ANCESTRAL_HAPLOTYPE_ID
• vcf::variant::record::samples::keys::key::CONDITIONAL_GENOTYPE_QUALITY
• vcf::variant::record::samples::keys::key::COPY_NUMBER_CONFIDENCE_INTERVAL
• vcf::variant::record::samples::keys::key::EXPECTED_ALTERNATE_ALLELE_COUNTS
• vcf::variant::record::samples::keys::key::FILTER
• vcf::variant::record::samples::keys::key::FORWARD_STRAND_READ_DEPTHS
• vcf::variant::record::samples::keys::key::GENOTYPE
• vcf::variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER
• vcf::variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_LIKELIHOODS
• vcf::variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_POSTERIOR_PROBABILITIES
• vcf::variant::record::samples::keys::key::GENOTYPE_COPY_NUMBER_QUALITY
• vcf::variant::record::samples::keys::key::GENOTYPE_LIKELIHOODS
• vcf::variant::record::samples::keys::key::GENOTYPE_POSTERIOR_PROBABILITIES
• vcf::variant::record::samples::keys::key::HAPLOTYPE_ID
• vcf::variant::record::samples::keys::key::HAPLOTYPE_QUALITY
• vcf::variant::record::samples::keys::key::LENGTH
• vcf::variant::record::samples::keys::key::LOCAL_ALTERNATIVE_ALLELE
• vcf::variant::record::samples::keys::key::LOCAL_EXPECTED_ALTERNATE_ALLELE_COUNTS
• vcf::variant::record::samples::keys::key::LOCAL_FORWARD_STRAND_READ_DEPTHS
• vcf::variant::record::samples::keys::key::LOCAL_GENOTYPE_LIKELIHOODS
• vcf::variant::record::samples::keys::key::LOCAL_GENOTYPE_POSTERIOR_PROBABILITIES
• vcf::variant::record::samples::keys::key::LOCAL_READ_DEPTHS
• vcf::variant::record::samples::keys::key::LOCAL_REVERSE_STRAND_READ_DEPTHS
• vcf::variant::record::samples::keys::key::LOCAL_ROUNDED_GENOTYPE_LIKELIHOODS
• vcf::variant::record::samples::keys::key::LOCAL_ROUNDED_GENOTYPE_POSTERIOR_PROBABILITIES
• vcf::variant::record::samples::keys::key::MAPPING_QUALITY
• vcf::variant::record::samples::keys::key::NOVEL_VARIANT_QUALITY_SCORE
• vcf::variant::record::samples::keys::key::PHASE_SET
• vcf::variant::record::samples::keys::key::PHASE_SET_LIST
• vcf::variant::record::samples::keys::key::PHASE_SET_LIST_ORDINALS
• vcf::variant::record::samples::keys::key::PHASE_SET_LIST_QUALITIES
• vcf::variant::record::samples::keys::key::PHASING_QUALITY
• vcf::variant::record::samples::keys::key::READ_DEPTH
• vcf::variant::record::samples::keys::key::READ_DEPTHS
• vcf::variant::record::samples::keys::key::RESERVED_LA
• vcf::variant::record::samples::keys::key::REVERSE_STRAND_READ_DEPTHS
• vcf::variant::record::samples::keys::key::ROUNDED_GENOTYPE_LIKELIHOODS
• vcf::variant::record::samples::keys::key::ROUNDED_GENOTYPE_POSTERIOR_PROBABILITIES