Trait noodles::vcf::variant::record::Record

pub trait Record {
    // Required methods
    fn reference_sequence_name<'a, 'h>(
        &'a self,
        header: &'h Header
    ) -> Result<&'a str, Error>
       where 'h: 'a;
    fn variant_start(&self) -> Option<Result<Position, Error>>;
    fn ids(&self) -> Box<dyn Ids + '_>;
    fn reference_bases(&self) -> Box<dyn ReferenceBases + '_>;
    fn alternate_bases(&self) -> Box<dyn AlternateBases + '_>;
    fn quality_score(&self) -> Option<Result<f32, Error>>;
    fn filters(&self) -> Box<dyn Filters + '_>;
    fn info(&self) -> Box<dyn Info + '_>;
    fn samples(&self) -> Result<Box<dyn Samples + '_>, Error>;

    // Provided methods
    fn variant_span(&self, header: &Header) -> Result<usize, Error> { ... }
    fn variant_end(&self, header: &Header) -> Result<Position, Error> { ... }
}

A variant record.

Required Methods

fn reference_sequence_name<'a, 'h>( &'a self, header: &'h Header ) -> Result<&'a str, Error>

where 'h: 'a,

Returns the reference sequence name.

fn variant_start(&self) -> Option<Result<Position, Error>>

Returns the variant start position.

fn ids(&self) -> Box<dyn Ids + '_>

Returns the IDs.

fn reference_bases(&self) -> Box<dyn ReferenceBases + '_>

Returns the reference bases.

fn alternate_bases(&self) -> Box<dyn AlternateBases + '_>

Returns the alternate bases.

fn quality_score(&self) -> Option<Result<f32, Error>>

Returns the quality scores.

fn filters(&self) -> Box<dyn Filters + '_>

Returns the filters.

fn info(&self) -> Box<dyn Info + '_>

Return the info fields.

fn samples(&self) -> Result<Box<dyn Samples + '_>, Error>

Returns the samples.

Provided Methods

fn variant_span(&self, header: &Header) -> Result<usize, Error>

Returns the variant span.

fn variant_end(&self, header: &Header) -> Result<Position, Error>

Returns or calculates the variant end position.

If available, this returns the value of the END INFO field. Otherwise, it is calculated using the variant start position and reference bases length.

Implementors

impl Record for noodles::bcf::Record

impl Record for noodles::vcf::Record

impl Record for RecordBuf