Trait noodles::sam::alignment::record::cigar::Cigar

pub trait Cigar {
    // Required methods
    fn is_empty(&self) -> bool;
    fn len(&self) -> usize;
    fn iter(&self) -> Box<dyn Iterator<Item = Result<Op, Error>> + '_>;

    // Provided methods
    fn alignment_span(&self) -> Result<usize, Error> { ... }
    fn read_length(&self) -> Result<usize, Error> { ... }
}

Alignment record CIGAR operations.

Required Methods

fn is_empty(&self) -> bool

Returns whether there are any operations.

fn len(&self) -> usize

Returns the number of operations.

fn iter(&self) -> Box<dyn Iterator<Item = Result<Op, Error>> + '_>

Returns an iterator over operations.

Provided Methods

fn alignment_span(&self) -> Result<usize, Error>

Calculates the alignment span over the reference sequence.

fn read_length(&self) -> Result<usize, Error>

Calculates the read length.

Trait Implementations

impl Cigar for Box<dyn Cigar + '_>

fn is_empty(&self) -> bool

Returns whether there are any operations.

fn len(&self) -> usize

Returns the number of operations.

fn iter(&self) -> Box<dyn Iterator<Item = Result<Op, Error>> + '_>

Returns an iterator over operations.

fn alignment_span(&self) -> Result<usize, Error>

Calculates the alignment span over the reference sequence.

fn read_length(&self) -> Result<usize, Error>

Calculates the read length.

impl<'a> IntoIterator for &'a dyn Cigar

type Item = Result<Op, Error>

The type of the elements being iterated over.

type IntoIter = Box<dyn Iterator<Item = <&'a dyn Cigar as IntoIterator>::Item> + 'a>

Which kind of iterator are we turning this into?

fn into_iter(self) -> <&'a dyn Cigar as IntoIterator>::IntoIter

Creates an iterator from a value.

Implementations on Foreign Types

impl Cigar for Box<dyn Cigar + '_>

fn is_empty(&self) -> bool

fn len(&self) -> usize

fn iter(&self) -> Box<dyn Iterator<Item = Result<Op, Error>> + '_>

Implementors

impl Cigar for &noodles::sam::alignment::record_buf::Cigar

impl Cigar for noodles::sam::alignment::record_buf::Cigar

impl<'a> Cigar for noodles::bam::record::Cigar<'a>

impl<'a> Cigar for noodles::sam::record::Cigar<'a>