Expand description
§Command line interface (CLI) options, including input processing options
This file provides some global options in the command line interface.
Structs§
- Input
Bam - Options to parse the input bam file and the filters that should be applied to the bam file.
- Input
BamBuilder - Builder for
InputBam. - Input
Mods - This struct contains the options input to our modification-data functions with restrictions on data received.
- Input
Mods Builder - Builder for
InputMods. - Input
Windowing - This struct contains the options input to our modification-data-windowing functions
- Input
Windowing Builder - Builder for
InputWindowing. - Optional
Tag - This struct contains an optional modification tag
- Required
Tag - This struct contains a required modification tag
Enums§
- SeqDisplay
Options - This enum contains inputs to display sequences with various options
Traits§
- Input
ModOptions - Retrieves options for modification input
- Input
Region Options - Retrieves options for region
- TagState
- Trait that returns a modification tag