Trait InputModOptions 

pub trait InputModOptions {
    // Provided methods
    fn tag(&self) -> Option<ModChar> { ... }
    fn mod_strand(&self) -> Option<RestrictModCalledStrand> { ... }
    fn mod_prob_filter(&self) -> ThresholdState { ... }
    fn trim_read_ends_mod(&self) -> usize { ... }
    fn base_qual_filter_mod(&self) -> u8 { ... }
}

Retrieves options for modification input

Provided Methods

fn tag(&self) -> Option<ModChar>

retrieves tag

fn mod_strand(&self) -> Option<RestrictModCalledStrand>

retrieves option to set basecalled strand or opposite in mod retrieval

fn mod_prob_filter(&self) -> ThresholdState

returns probability filter

fn trim_read_ends_mod(&self) -> usize

returns read end trimming

fn base_qual_filter_mod(&self) -> u8

returns threshold for filtering base PHRED quality

Implementors

impl<S: TagState + Args + FromArgMatches + Default> InputModOptions for InputMods<S>