InputRegionOptions

nanalogue_core::cli

Trait InputRegionOptions 

Source 
pub trait InputRegionOptions {
    // Provided methods
    fn region_filter(&self) -> &Option<Bed3<i32, u64>> { ... }
    fn region_filter_genomic_string(&self) -> Option<GenomicRegion> { ... }
    fn set_region_filter(&mut self, _value: Option<Bed3<i32, u64>>) { ... }
    fn is_full_overlap(&self) -> bool { ... }
    fn convert_region_to_bed3(
        &mut self,
        header: HeaderView,
    ) -> Result<(), Error> { ... }
}
Expand description

Retrieves options for region

Provided Methods§

Source

fn region_filter(&self) -> &Option<Bed3<i32, u64>>

returns region requested

Source

fn region_filter_genomic_string(&self) -> Option<GenomicRegion>

returns region requested but region in genomic string format

Source

fn set_region_filter(&mut self, _value: Option<Bed3<i32, u64>>)

sets region requested

Source

fn is_full_overlap(&self) -> bool

returns true if full overlap with region is requested as opposed to only partial overlap. defaults to false.

Source

fn convert_region_to_bed3(&mut self, header: HeaderView) -> Result<(), Error>

converts region from genomic string representation to bed3 representation

§Errors

Returns error if conversion fails

Implementors§