Struct Germline 

pub struct Germline {
    pub species: Species,
    pub name: Gene,
    pub alleles: Vec<(usize, AnnotatedSequence)>,
}

Intermediate representation for germline

Fields

species: Species

The species for this germline

name: Gene

The name for the germline

alleles: Vec<(usize, AnnotatedSequence)>

All alleles

Implementations

impl Germline

pub fn iter(&self) -> <&Self as IntoIterator>::IntoIter

Iterate over the sequences

Trait Implementations

impl<'__de, __Context> BorrowDecode<'__de, __Context> for Germline

fn borrow_decode<__D: BorrowDecoder<'__de, Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given BorrowDecode.

impl CVData for Germline

type Index = (Species, Gene)

The type used for the index

fn index(&self) -> Option<Self::Index>

The numerical index or id of the item.

fn name(&self) -> Option<Cow<'_, str>>

The name of the item, this will be stored in a case insensitive manner in the crate::CVIndex but should be reported in the correct casing here.

fn synonyms(&self) -> impl Iterator<Item = &str>

Any synonyms that can be uniquely attributed to this data element. So EXACT synonyms from Obo files.

impl CVStructure<Germline> for HashMap<Species, Germlines>

type Index = (Species, Gene)

The indexing type

type IterIndexed<'a> = Box<dyn Iterator<Item = (<HashMap<Species, Germlines> as CVStructure<Germline>>::Index, Arc<Germline>)> + 'a>

The iterator to use when the index and data items are requested

type IterData<'a> = Box<dyn Iterator<Item = Arc<Germline>> + 'a>

The iterator to use when only the data items are requested

fn is_empty(&self) -> bool

See if no data items are present

fn len(&self) -> usize

The total number of data items present

fn clear(&mut self)

Clear this entire structure

fn add(&mut self, data: Arc<Germline>)

Add a sinlge data item to the structure

fn iter_indexed(&self) -> Self::IterIndexed<'_>

Iterate over all data items and return both the index and the data item

fn iter_data(&self) -> Self::IterData<'_>

Iterate over all data items

fn index(&self, index: Self::Index) -> Option<Arc<Germline>>

Get an element by the index

fn remove(&mut self, index: Self::Index)

Remove an element based on the index

impl Clone for Germline

fn clone(&self) -> Germline

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Germline

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<__Context> Decode<__Context> for Germline

fn decode<__D: Decoder<Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given Decode.

impl<'de> Deserialize<'de> for Germline

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Encode for Germline

fn encode<__E: Encoder>(&self, encoder: &mut __E) -> Result<(), EncodeError>

Encode a given type.

impl<'a> IntoIterator for &'a Germline

type IntoIter = Iter<'a, (usize, AnnotatedSequence)>

Which kind of iterator are we turning this into?

type Item = &'a (usize, AnnotatedSequence)

The type of the elements being iterated over.

fn into_iter(self) -> Self::IntoIter

Creates an iterator from a value.

impl<'a> IntoParallelIterator for &'a Germline

Available on crate feature rayon only.

type Iter = Iter<'a, (usize, AnnotatedSequence)>

The parallel iterator type that will be created.

type Item = &'a (usize, AnnotatedSequence)

The type of item that the parallel iterator will produce.

fn into_par_iter(self) -> Self::Iter

Converts self into a parallel iterator.

impl Serialize for Germline

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.