Struct AnnotatedSequence 

pub struct AnnotatedSequence {
    pub sequence: Peptidoform<UnAmbiguous>,
    pub regions: Vec<(Region, usize)>,
    pub annotations: Vec<(Annotation, usize)>,
}

Intermediate representation for annotated sequence

Fields

sequence: Peptidoform<UnAmbiguous>

The sequence

regions: Vec<(Region, usize)>

The different regions in the sequence, defined by their name and length

annotations: Vec<(Annotation, usize)>

0 based locations of single amino acid annotations, overlapping with the regions defined above

Implementations

impl AnnotatedSequence

pub fn new( sequence: Peptidoform<UnAmbiguous>, regions: Vec<(Region, usize)>, conserved: Vec<(Annotation, usize)>, ) -> Self

Create a new annotated sequence

Trait Implementations

impl<'__de, __Context> BorrowDecode<'__de, __Context> for AnnotatedSequence

fn borrow_decode<__D: BorrowDecoder<'__de, Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given BorrowDecode.

impl Clone for AnnotatedSequence

fn clone(&self) -> AnnotatedSequence

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for AnnotatedSequence

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<__Context> Decode<__Context> for AnnotatedSequence

fn decode<__D: Decoder<Context = __Context>>( decoder: &mut __D, ) -> Result<Self, DecodeError>

Attempt to decode this type with the given Decode.

impl<'de> Deserialize<'de> for AnnotatedSequence

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Encode for AnnotatedSequence

fn encode<__E: Encoder>(&self, encoder: &mut __E) -> Result<(), EncodeError>

Encode a given type.

impl Serialize for AnnotatedSequence

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.