List of all items

Structs

• OpenOptions
• arrays::CooMatrix
• bam::BamIndex
• bam::BamReader
• bam::BamRecord
• bam::Chunk
• bam::Cursor
• bam::Cursors
• bam::EntriesRequest
• bam::EntryFilter
• bam::HeaderField
• bam::HeaderLine
• bam::LocusEntries
• bam::LocusWalk
• bam::RecordFilter
• bam::RefIndex
• bam::RefMetadata
• bam::SamHeader
• bam::VirtualOffset
• bam::WindowEntries
• bbi::BbiReader
• bbi::BbiWriter
• bbi::BbiWriterOptions
• bbi::BedEntry
• bbi::ConvertResult
• bbi::CostModel
• bbi::DataInterval
• bbi::EntriesRequest
• bbi::EntryWalk
• bbi::EntryWindows
• bbi::ProfileRequest
• bbi::QuantifyRequest
• bbi::ReadCommon
• bbi::SectionCounts
• bbi::ValuesRequest
• bbi::ValuesWalk
• bbi::ValuesWindows
• bbi::ZoomRecord
• bbi::header::BbiHeader
• bbi::header::BedAutoSql
• bbi::header::ChrTreeHeader
• bbi::header::TotalSummary
• bbi::header::ZoomHeader
• bytes::LeBuf
• bytes::LeCursor
• genomic::BinPlan
• genomic::BinStats
• genomic::ChrEntry
• genomic::ChrMap
• genomic::IndexedLoc
• genomic::IndexedLocs
• genomic::LocBatch
• genomic::Locs
• genomic::ValueStats
• hic::ContactRecord
• hic::HiCReader
• hic::HiCRequest
• hic::Loc2D
• hic::MatrixMetadata
• hic::Normalizations
• hic::Side
• hic::header::ExpectedValueVector
• hic::header::HiCFooter
• hic::header::HiCHeader
• hic::header::HiCIndexItem
• hic::header::NormalizationVector
• parallel::Executor
• parallel::Promise
• progress::CancelFlag
• progress::ProgressTracker
• source::CachedSource
• source::LocalSink
• source::LocalSource
• source::RetryPolicy
• source::SinkSource
• source::UrlSource
• source::testing::MemorySource

Enums

• FileKind
• Reader
• bam::TagValue
• bbi::FieldType
• bbi::SectionPolicy
• bbi::TextFormat
• bbi::Zoom
• bbi::header::BbiKind
• error::Error
• genomic::BinMode
• genomic::Reduce
• genomic::Strand
• hic::HiCMode
• hic::Unit

Traits

• source::ByteSink
• source::ByteSource

Functions

• arrays::bilinear
• arrays::bilinear_sparse
• arrays::compress_sparse_by_color
• bam::window_locs
• bbi::convert_to_bigbed
• bbi::convert_to_bigwig
• bbi::header::build_auto_sql
• bbi::header::check_data_tree_magic
• bbi::header::default_bed_fields
• bbi::header::read_auto_sql
• bbi::header::read_header
• bbi::header::read_total_summary
• bbi::header::read_zoom_headers
• bbi::header::to_bbi_f32
• bbi::header::to_bbi_u32
• bbi::header::validate_bed_field_names
• bbi::header::write_header
• bbi::header::write_total_summary
• bbi::header::write_zoom_header
• bbi::text::push_double
• bbi::text::push_float
• error::check_range
• genomes::bundled_genomes
• genomes::get_chr_sizes
• hic::header::compute_expected_values
• hic::header::read_footer
• hic::header::read_header
• hic::header::read_normalization_vector
• hic::header::vector_key
• npz::write_dense
• npz::write_sparse
• open
• parallel::resolve_parallel
• progress::default_progress
• sniff
• sniff_source
• source::http_get_text
• source::is_gzipped
• source::is_url
• source::open
• source::open_text

Type Aliases

• bbi::WindowLoc
• error::Result
• progress::ProgressFn
• source::GzipReader
• source::TextInput

Statics

• bam::BGZF_EOF_BLOCK

Constants

• bbi::BIGBED_MAGIC
• bbi::BIGWIG_MAGIC
• bbi::DEFAULT_BLOCK_SIZE
• bbi::DEFAULT_ITEMS_PER_SLOT_BIGBED
• bbi::DEFAULT_ITEMS_PER_SLOT_BIGWIG
• bbi::header::BBI_HEADER_SIZE
• bbi::header::BBI_MIN_VERSION
• bbi::header::BBI_OUTPUT_VERSION
• bbi::header::BED_FIELD_NAMES
• bbi::header::BED_FIELD_TYPES
• bbi::header::BIGBED_MAGIC_SWAPPED
• bbi::header::BIGWIG_MAGIC_SWAPPED
• bbi::header::CHR_TREE_HEADER_SIZE
• bbi::header::CHR_TREE_MAGIC
• bbi::header::CHR_TREE_MAGIC_SWAPPED
• bbi::header::DATA_TREE_HEADER_SIZE
• bbi::header::DATA_TREE_MAGIC
• bbi::header::DATA_TREE_MAGIC_SWAPPED
• bbi::header::TOTAL_SUMMARY_SIZE
• bbi::header::ZOOM_HEADER_SIZE
• parallel::RECOMMENDED_MAX_THREADS
• progress::REPORT_INTERVAL
• source::LOCAL_BLOCK_SIZE
• source::MAX_BLOCKS
• source::URL_BLOCK_SIZE