Struct HiCRequest

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pub struct HiCRequest {Show 14 fields
    pub chr_ids: Vec<String>,
    pub starts: Vec<i64>,
    pub ends: Vec<i64>,
    pub bin_size: Option<i64>,
    pub bin_count: Option<usize>,
    pub exact_bin_count: bool,
    pub full_bin: bool,
    pub def_value: f32,
    pub triangle: bool,
    pub min_distance: Option<i64>,
    pub max_distance: Option<i64>,
    pub normalization: String,
    pub mode: HiCMode,
    pub unit: Unit,
}

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§chr_ids: Vec<String>§starts: Vec<i64>§ends: Vec<i64>§bin_size: Option<i64>

None takes the smallest available. Must be one the file has.

§bin_count: Option<usize>

Takes precedence over bin_size, selecting the closest bin size that gives about this many bins.

§exact_bin_count: bool

Resize the output to match bin_count exactly, bilinearly.

§full_bin: bool§def_value: f32§triangle: bool

On one chromosome a hic file stores one side of the diagonal only. triangle reads that side alone rather than mirroring it — so a window lying entirely on the other side comes back empty.

§min_distance: Option<i64>§max_distance: Option<i64>§normalization: String§mode: HiCMode§unit: Unit

Implementations§

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impl HiCRequest

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pub fn new(chr_ids: Vec<String>, starts: Vec<i64>, ends: Vec<i64>) -> Self

Trait Implementations§

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impl Clone for HiCRequest

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fn clone(&self) -> HiCRequest

Returns a duplicate of the value. Read more

1.0.0 (const: unstable) · Source§

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for HiCRequest

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

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impl UnwindSafe for HiCRequest

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self> ⓘ

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self> ⓘ
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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