Struct BbiWriterOptions

Source

pub struct BbiWriterOptions {
    pub kind: BbiKind,
    pub chr_sizes: Option<ChrMap>,
    pub fields: IndexMap<String, String>,
    pub items_per_slot: Option<usize>,
    pub block_size: u32,
    pub compression_level: u32,
    pub parallel: i64,
    pub section_policy: SectionPolicy,
    pub cost_model: CostModel,
}

Fields§

§kind: BbiKind§chr_sizes: Option<ChrMap>

Declared sizes. Every written coordinate is checked against them, and a written id resolves against their keys the way a read one does. None infers each chromosome’s size from what is written.

§fields: IndexMap<String, String>

bigBed only. The first three must be the coordinates.

§items_per_slot: Option<usize>§block_size: u32§compression_level: u32§parallel: i64§section_policy: SectionPolicy

How a wig section decides between widening its encoding and closing. Every setting writes a valid file; they differ in how big it is. See SectionPolicy and examples/section_policy.rs.

§cost_model: CostModel

The constants behind SectionPolicy::Cost. Exposed for the same reason: so the model can be measured rather than argued about.

BbiWriterOptions

Struct BbiWriterOptions Copy item path

Fields§

Trait Implementations§

impl Default for BbiWriterOptions

fn default() -> Self

Auto Trait Implementations§

impl Freeze for BbiWriterOptions

impl RefUnwindSafe for BbiWriterOptions

impl Send for BbiWriterOptions

impl Sync for BbiWriterOptions

impl Unpin for BbiWriterOptions

impl UnsafeUnpin for BbiWriterOptions

impl UnwindSafe for BbiWriterOptions

Blanket Implementations§

impl<T> Any for Twhere T: 'static + ?Sized,

fn type_id(&self) -> TypeId

impl<T> Borrow<T> for Twhere T: ?Sized,

fn borrow(&self) -> &T

impl<T> BorrowMut<T> for Twhere T: ?Sized,

fn borrow_mut(&mut self) -> &mut T

impl<T> From<T> for T

fn from(t: T) -> T

impl<T, U> Into<U> for Twhere U: From<T>,

fn into(self) -> U

impl<T> IntoEither for T

fn into_either(self, into_left: bool) -> Either<Self, Self> ⓘ

fn into_either_with<F>(self, into_left: F) -> Either<Self, Self> ⓘwhere F: FnOnce(&Self) -> bool,

impl<T> Pointable for T

const ALIGN: usize

type Init = T

unsafe fn init(init: <T as Pointable>::Init) -> usize

unsafe fn deref<'a>(ptr: usize) -> &'a T

unsafe fn deref_mut<'a>(ptr: usize) -> &'a mut T

unsafe fn drop(ptr: usize)

impl<T, U> TryFrom<U> for Twhere U: Into<T>,

type Error = !

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impl<T, U> TryInto<U> for Twhere U: TryFrom<T>,

type Error = <U as TryFrom<T>>::Error

fn try_into(self) -> Result<U, <U as TryFrom<T>>::Error>

Struct BbiWriterOptions

impl<T> Any for T
where T: 'static + ?Sized,

impl<T> Borrow<T> for T
where T: ?Sized,

impl<T> BorrowMut<T> for T
where T: ?Sized,

impl<T, U> Into<U> for T
where U: From<T>,

fn into_either_with<F>(self, into_left: F) -> Either<Self, Self> ⓘ
where F: FnOnce(&Self) -> bool,

impl<T, U> TryFrom<U> for T
where U: Into<T>,

impl<T, U> TryInto<U> for T
where U: TryFrom<T>,