#![allow(clippy::missing_panics_doc)]
use std::io::BufReader;
use crate::{SageData, SageVersion, test_format};
#[test]
fn sage() {
match test_format::<SageData>(
BufReader::new(DATA.as_bytes()),
&mzcore::ontology::STATIC_ONTOLOGIES,
true,
false,
Some(SageVersion::V0_14),
) {
Ok(n) => assert_eq!(n, 19),
Err(e) => {
println!("{e}");
panic!("Failed identified peptides test");
}
}
}
#[test]
fn sage_decoy() {
match test_format::<SageData>(
BufReader::new(DATA_DECOY.as_bytes()),
&mzcore::ontology::STATIC_ONTOLOGIES,
true,
false,
Some(SageVersion::V0_14),
) {
Ok(n) => assert_eq!(n, 23),
Err(e) => {
println!("{e}");
panic!("Failed identified peptides test");
}
}
}
const DATA: &str = r"psm_id peptide proteins num_proteins filename scannr rank label expmass calcmass charge peptide_len missed_cleavages semi_enzymatic isotope_error precursor_ppm fragment_ppm hyperscore delta_next delta_best rt aligned_rt predicted_rt delta_rt_model ion_mobility predicted_mobility delta_mobility matched_peaks longest_b longest_y longest_y_pct matched_intensity_pct scored_candidates poisson sage_discriminant_score posterior_error spectrum_q peptide_q protein_q ms2_intensity
68 Q[-17.027]VQLQQSAAE anti-FLAG-M2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=13947 1 1 1083.5209 1083.5192 2 10 0 0 0.0 1.5772523 4.326962 48.89544628732507 3.804374154620227 0.0 29.031733 0.4219151 0.42962697 0.0077118576 0.0 0.0 0.0 15 6 6 0.6 52.72756 48 -5.310279475246126 -0.2721751 -30.489534 0.003984064 0.013706031 1.0 2537541.5
258 AGNTFTCSVLHE 139H2_HC;anti-FLAG-M2_HC 2 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBusHCD.mzML controllerType=0 controllerNumber=1 scan=18157 1 1 1277.5806 1277.571 2 12 0 0 0.0 7.4527745 5.461328 29.359412403792973 29.359412403792973 0.0 30.288746 0.61734784 0.62651765 0.009169817 0.0 0.0 0.0 9 2 5 0.41666666 44.847633 1 -1.3794106637415624 -0.27700272 -30.085367 0.003984064 0.013706031 1.0 37966.004
297 ATHKTSTSPIVKSFNR[+14.016]NE[+57.0214] 139H2_LC;anti-FLAG-M2_LC 2 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=40290 1 1 2087.0747 2087.0762 3 18 0 0 0.0 0.7018643 4.2632957 45.554752225675415 0.0 0.0 51.26408 0.89359313 0.89359313 0.0 0.0 0.0 0.0 16 4 5 0.2777778 48.30265 147 -6.97961068204291 -0.29033038 -28.985697 0.003984064 0.013706031 1.0 144385.33
250 Q[-17.027]VQLQQSAAE anti-FLAG-M2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=11449 1 1 1083.5221 1083.5192 2 10 0 0 0.0 2.7038596 4.253701 40.055635259043456 3.594351101362662 0.0 22.185923 0.4098663 0.42962697 0.019760668 0.0 0.0 0.0 13 6 5 0.5 39.98955 46 -5.091311704249276 -0.29421294 -28.668184 0.003984064 0.013706031 1.0 216813.19
34 Q[-17.027]VQLQQSGAE 139H2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=13201 1 1 1069.5068 1069.5035 2 10 0 0 0.0 3.0817041 4.7112064 42.145033139534505 7.121257426386592 0.0 27.521046 0.40820804 0.4030738 0.0051342547 0.0 0.0 0.0 14 6 5 0.5 30.92082 29 -6.025834389552996 -0.3012659 -28.096254 0.003984064 0.013706031 1.0 226430.94
201 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBusHCD.mzML controllerType=0 controllerNumber=1 scan=16773 1 1 1720.8225 1720.8188 2 17 0 0 0.0 2.128118 5.3211784 44.885623333810656 2.3815242959373677 0.0 28.677181 0.5936372 0.60655576 0.012918532 0.0 0.0 0.0 16 6 5 0.29411766 40.6799 173 -9.665309113459845 -0.332584 -25.624058 0.003984064 0.013706031 1.0 94674.89
226 Q[-17.027]VQLQQSAAE anti-FLAG-M2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=11301 1 1 1083.5217 1083.5192 2 10 0 0 0.0 2.3658774 5.314282 40.061219947915205 3.550720861949152 0.0 21.94597 0.4058746 0.42962697 0.023752362 0.0 0.0 0.0 13 6 5 0.5 48.80738 48 -5.5716324626825235 -0.3330954 -25.582886 0.003984064 0.013706031 1.0 215946.81
222 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBusHCD.mzML controllerType=0 controllerNumber=1 scan=16952 1 1 1720.8245 1720.8188 2 17 0 0 0.0 3.2631123 5.1479435 38.36399763825078 2.353645184534386 0.0 28.915075 0.5971373 0.60655576 0.009418488 0.0 0.0 0.0 13 6 3 0.1764706 34.576347 66 -5.175294143112638 -0.35454315 -23.955624 0.003984064 0.013706031 1.0 63050.15
224 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=22930 1 1 1720.824 1720.8188 2 17 0 0 0.0 2.979364 5.0436964 55.80943198592773 2.5457567920643243 0.0 47.34651 0.5880926 0.60655576 0.018463135 0.0 0.0 0.0 20 6 5 0.29411766 39.965954 333 -11.506200275837854 -0.3676138 -22.99136 0.003984064 0.013706031 1.0 221128.81
13 [+27.995]-VPYTFGGGTKLE 131-2a_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=24000 1 1 1295.6453 1295.6399 2 12 0 0 0.0 4.145506 6.2266393 31.96070176878828 0.0 0.0 38.387306 0.6793828 0.725527 0.046144187 0.0 0.0 0.0 10 3 5 0.41666666 27.924307 7 -2.5168127110893543 -0.3680259 -22.96079 0.003984064 0.013706031 1.0 50903.387
90 LNSLTSEDSAVYYC[+57.0214]AR[+0.984016]E anti-FLAG-M2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=33562 1 1 1977.869 1977.8623 2 17 1 0 0.0 3.394501 4.2286243 39.65848601439715 0.0 0.0 68.27057 0.77794516 0.77793664 0.000008523464 0.0 0.0 0.0 13 4 9 0.5294118 63.78223 880 -6.321589862290821 -0.37199542 -22.671942 0.003984064 0.013706031 1.0 150724.14
234 Q[-17.027]VQLQQSAAE anti-FLAG-M2_HC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBusHCD.mzML controllerType=0 controllerNumber=1 scan=11298 1 1 1083.5231 1083.5192 2 10 0 0 0.0 3.6051443 4.347138 40.03368128463812 2.1763350463467646 0.0 22.059513 0.49627298 0.42962697 0.06664601 0.0 0.0 0.0 13 6 4 0.4 37.836575 40 -4.514666428409349 -0.392876 -21.18462 0.003984064 0.013706031 1.0 218509.98
260 DIVMSQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=19637 1 1 1704.8264 1704.824 2 17 0 0 0.0 1.4320567 3.6145332 49.230159762961 15.410105905845562 0.0 33.09084 0.591274 0.5662531 0.025020897 0.0 0.0 0.0 15 6 5 0.29411766 42.009964 94 -9.333262767059562 -0.39697143 -20.898802 0.003984064 0.013706031 1.0 2413815.5
46 VHTAQTQPR[+0.984016]EE-[-0.984016] 139H2_HC;anti-FLAG-M2_HC 2 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=6001 1 1 1294.6272 1294.6266 3 11 1 0 0.0 0.47144976 4.4562635 55.44425044464235 2.2673195462646163 0.0 12.45119 0.24792513 0.601642 0.35371688 0.0 0.0 0.0 18 5 5 0.45454547 51.329735 4 -1.7995540993010308 -0.39836758 -20.801445 0.003984064 0.013706031 1.0 2194955.5
40 DIVMSQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=26843 1 1 1704.8295 1704.824 2 17 0 0 0.0 3.2221246 3.4901772 49.18510235659944 14.423783669103138 0.0 55.149353 0.658891 0.5662531 0.0926379 0.0 0.0 0.0 16 6 5 0.29411766 39.335335 107 -9.10993737230424 -0.402913 -20.48709 0.003984064 0.013706031 1.0 721527.0
304 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_exBUstandard.mzML controllerType=0 controllerNumber=1 scan=16662 1 1 1720.8226 1720.8188 2 17 0 0 0.0 2.199055 6.3346987 52.99793412574644 2.567776726490308 0.0 29.34575 0.5289729 0.60655576 0.077582836 0.0 0.0 0.0 19 6 5 0.29411766 42.25518 277 -10.613723235983853 -0.40672565 -20.22537 0.003984064 0.013706031 1.0 169054.62
212 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=22811 1 1 1720.8243 1720.8188 2 17 0 0 0.0 3.1921754 6.0723367 55.856323439043265 2.6360479423688616 0.0 47.106743 0.5859171 0.60655576 0.020638645 0.0 0.0 0.0 20 6 5 0.29411766 40.340023 347 -13.02535171263656 -0.41279852 -19.81235 0.003984064 0.013706031 1.0 199134.47
29 DIVMSQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=26712 1 1 1704.8274 1704.824 2 17 0 0 0.0 2.0048788 3.9185774 52.31447120292709 16.684994905824247 0.0 54.908207 0.656703 0.5662531 0.09044987 0.0 0.0 0.0 17 6 5 0.29411766 38.434063 91 -9.754505374647184 -0.42236862 -19.170193 0.003984064 0.013706031 1.0 1012092.44
231 DIVM[+15.9949]SQSPSSLAVSVGE 139H2_LC 1 20240113_EX3_UM5_Peng0013_SA_EXT00_GluC_2h_standard.mzML controllerType=0 controllerNumber=1 scan=23044 1 1 1720.8228 1720.8188 2 17 0 0 0.0 2.2699924 5.326675 43.41870813056693 2.4671118628491797 0.0 47.584812 0.59025484 0.60655576 0.016300917 0.0 0.0 0.0 15 6 4 0.23529412 43.65104 214 -9.511001335763002 -0.42716968 -18.852083 0.003984064 0.013706031 1.0 99365.164";
const DATA_DECOY: &str = r"psm_id peptide proteins num_proteins filename scannr rank label expmass calcmass charge peptide_len missed_cleavages semi_enzymatic isotope_error precursor_ppm fragment_ppm hyperscore delta_next delta_best rt aligned_rt predicted_rt delta_rt_model ion_mobility predicted_mobility delta_mobility matched_peaks longest_b longest_y longest_y_pct matched_intensity_pct scored_candidates poisson sage_discriminant_score posterior_error spectrum_q peptide_q protein_q ms2_intensity
3009 SITSSGTYINYGDSM[+15.9949]KGRFS D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=14590 1 1 2185.9954 2185.9949 3 20 0 0 0.0 0.22336794 4.1925025 21.697242183431943 21.697242183431943 0.0 32.032597 0.40040746 0.4611772 0.060769737 0.0 0.0 0.0 4 1 1 0.05 11.209677 33 -1.9272300123811885 2.6602905 -0.729269 0.028956566 0.07457521 0.21083325 51801.223
120 KN[+0.984]VTAN[+0.984]YAEGAVR sp|P00778|PRLA_LYSEN 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=2358 1 1 1393.6857 1393.6836 3 13 0 0 0.0 1.4889992 2.2380173 24.604598462943663 3.9130847080792215 0.0 11.967722 0.14959653 0.3295908 0.17999427 0.0 0.0 0.0 5 1 1 0.07692308 8.481192 82 -2.4561526297369856 2.6600266 -0.729147 0.028956566 0.07487465 0.32884258 138805.56
3905 [+43.006]-QSVLTQ[+0.984]PPSVSGAPGQR D306_PRK5_UTRs_of_pTwist_B10_LC_lambda_DENV_mab;D308_PRK5_UTRs_of_pTwist_D5_LC_lambda_DENV_mab 2 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=16569 2 1 1751.9058 1751.8802 3 17 0 0 0.0 14.562929 3.577925 23.229150000018855 1.8305946295128948 0.0 35.001495 0.4375187 0.43805274 0.0005340576 0.0 0.0 0.0 6 1 1 0.05882353 15.115107 153 -2.748509176203757 2.656684 -0.72760403 0.028956566 0.06801107 0.3015042 23994.402
4440 YKC[+57.02]KVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=15428 2 1 4423.376 4423.3667 7 39 0 0 0.0 2.097347 1.1564837 24.59425774947629 0.47697741529967885 0.0 33.29087 0.41613588 0.3865151 0.029620767 0.0 0.0 0.0 4 1 2 0.051282052 8.69333 90 -1.6438515162645315 2.655363 -0.72699296 0.028956566 0.0027932103 0.21083325 316256.78
2874 PVTKSFNRGEC[+57.02] D304_PRK5_UTRs_of_pTwist_C4_LC_kappa_DENV_mab;D307_PRK5_UTRs_of_pTwist_C8_LC_kappa_DENV_mab 2 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=12399 1 1 1294.5983 1293.6122 3 11 0 0 1.00335 13.347239 5.3225737 33.69038966854999 1.7123676276337108 0.0 28.754171 0.35942715 0.37990555 0.020478398 0.0 0.0 0.0 10 1 6 0.54545456 9.416281 69 -6.385817058267877 2.655263 -0.72694665 0.028956566 0.0027932103 0.21083325 102735.24
3221 VTHQGLSSPVTKSFNRGEC[+57.02] D304_PRK5_UTRs_of_pTwist_C4_LC_kappa_DENV_mab;D307_PRK5_UTRs_of_pTwist_C8_LC_kappa_DENV_mab 2 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=12556 2 1 2104.9854 2103.0151 4 19 0 0 2.0067 17.349142 3.7287135 26.902948499370464 9.799468326334633 0.0 28.99184 0.362398 0.4014564 0.039058387 0.0 0.0 0.0 6 2 2 0.10526316 16.63048 151 -2.707372903325368 2.6534286 -0.726099 0.028956566 0.0027932103 0.21083325 227675.19
4089 RVSISLD D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=15531 1 1 788.441 788.43915 2 7 0 0 0.0 2.3223765 1.7525595 21.13919428485439 21.13919428485439 0.0 33.4427 0.41803375 0.3213596 0.096674144 0.0 0.0 0.0 4 3 1 0.14285715 4.950212 2 -1.336680944356441 2.6526606 -0.7257447 0.028956566 0.07517504 0.21083325 45429.64
3148 LKGTEVQLTELRRTSQSLEIELQ[+0.984] sp|P35900|K1C20_HUMAN 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=16184 1 1 2671.459 2671.4387 4 23 0 0 0.0 7.5852747 6.3652215 23.00006756780561 23.00006756780561 0.0 34.423 0.4302875 0.4653371 0.035049587 0.0 0.0 0.0 4 2 1 0.04347826 20.317442 14 -1.9365807260416887 2.651485 -0.72520274 0.028956566 0.07547484 0.21083325 214728.88
926 ADVKWQVKN[+0.984] rev_D304_PRK5_UTRs_of_pTwist_C4_LC_kappa_DENV_mab;rev_D307_PRK5_UTRs_of_pTwist_C8_LC_kappa_DENV_mab 2 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=13578 1 -1 1087.5667 1087.5663 2 9 0 0 0.0 0.33672512 4.408186 24.21074105116456 9.043171195277147 0.0 30.504028 0.38130036 0.43925917 0.05795881 0.0 0.0 0.0 6 1 1 0.11111111 10.764503 12 -2.730580595693976 2.6507988 -0.72488683 0.029426433 0.0758844 0.35747865 38719.5
4650 YKC[+57.02]KVSN[+0.984]KALPAPIE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=13100 2 1 1717.9076 1717.9058 3 15 0 0 0.0 1.0658638 4.210438 21.018509725071848 21.018509725071848 0.0 29.802416 0.3725302 0.404902 0.03237182 0.0 0.0 0.0 6 2 0 0.0 9.545652 144 -2.826256001682357 2.6485493 -0.7238525 0.029426433 0.0027932103 0.21083325 284148.25
3940 VGTFAARVFPGNDRAWVSLTSAQTL sp|P00778|PRLA_LYSEN 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=22359 1 1 2663.4124 2663.3816 3 25 0 0 0.0 11.549807 4.1694064 16.20748138173557 16.20748138173557 0.0 43.743954 0.5467994 0.7498291 0.20302969 0.0 0.0 0.0 4 0 1 0.04 14.4639845 42 -1.862286005573953 2.6455297 -0.72246796 0.029426433 0.07618422 0.32884258 85567.375
3482 SSSIGTC[+57.02]SITISQGPD rev_D310_PRK5_UTRs_of_pTwist_B7_LC_lambda_DENV_mab 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=17480 1 -1 1608.7437 1608.7288 3 16 0 0 0.0 9.257316 4.0103273 21.195694417097837 21.195694417097837 0.0 36.376602 0.45470753 0.35149837 0.10320917 0.0 0.0 0.0 4 2 1 0.0625 10.927767 52 -1.7914978632401737 2.6445787 -0.72203285 0.029821074 0.076594725 0.4321233 33914.805
656 VEVHN[+0.984]AKTKPRE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=11025 1 1 1407.7495 1407.747 3 12 0 0 0.0 1.8209765 2.181698 25.999691104120643 0.23617085315158803 0.0 26.73074 0.33413425 0.24348022 0.09065403 0.0 0.0 0.0 4 1 2 0.16666667 14.868737 25 -1.799269021450551 2.64337 -0.7214784 0.029821074 0.07689362 0.21083325 833549.4
4273 SISLDTSKDQ[+0.984]FSLRM[+15.9949]RSVT D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=15370 1 1 2188.1006 2187.084 4 19 0 0 1.00335 6.0589824 1.8033254 24.49670874233539 1.5495709667051756 0.0 33.202835 0.41503543 0.4881083 0.07307288 0.0 0.0 0.0 6 3 1 0.05263158 10.191443 197 -2.920345505657804 2.6425512 -0.72110283 0.029821074 0.077191845 0.21083325 84473.94
2007 LNKVFDDLTLHKTDLEIQ[+0.984] sp|P35900|K1C20_HUMAN 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=18948 1 1 2142.1118 2142.1208 4 18 0 0 0.0 4.216953 4.138835 27.66431421217846 2.0570995547420843 0.0 38.597942 0.48247427 0.504508 0.022033751 0.0 0.0 0.0 4 1 1 0.055555556 20.976454 183 -1.621269196755815 2.641637 -0.7206838 0.029821074 0.077489436 0.21083325 1060078.0
3492 LGEHN[+0.984]IDVLEGNEQFINAAKIITHPN[+0.984]FNGNTLD sp|P00761|TRYP_PIG 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=17626 1 1 3649.7651 3648.7693 4 33 0 0 1.00335 2.055602 2.5251715 31.843398821228156 0.0 0.0 36.59882 0.45748526 0.49164173 0.03415647 0.0 0.0 0.0 7 2 3 0.09090909 11.989342 1055 -3.873300463179726 2.640551 -0.72018665 0.029821074 0.07778644 0.27265385 671212.75
2856 TLM[+15.9949]ISRTPE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=12395 2 1 1062.5398 1062.5378 2 9 0 0 0.0 1.8381681 2.2927043 25.10610127839407 7.239942748060937 0.0 28.749588 0.35936984 0.3188471 0.040522754 0.0 0.0 0.0 4 2 1 0.11111111 9.649812 56 -1.593922506322101 2.635363 -0.71781933 0.029821074 0.0027932103 0.21083325 424052.75
2875 PVTKSFN[+0.984]RGEC[+57.02] D304_PRK5_UTRs_of_pTwist_C4_LC_kappa_DENV_mab;D307_PRK5_UTRs_of_pTwist_C8_LC_kappa_DENV_mab 2 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=12399 2 1 1294.5983 1294.5962 3 11 0 0 0.0 1.6029661 7.090494 25.692086919496077 25.692086919496077 0.0 28.754171 0.35942715 0.38010958 0.020682424 0.0 0.0 0.0 6 1 4 0.36363637 12.530629 69 -3.0698086849995883 2.6332152 -0.716843 0.029821074 0.0027932103 0.21083325 123840.61
1945 TQYLTPTSN[+0.984]FSQ[+0.984]LRAAAVQ[+0.984]S sp|P00800|THER_BACTH 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=11515 1 1 2187.0537 2185.0535 4 20 0 0 2.0067 2.9545765 2.4806972 21.73125961809047 21.73125961809047 0.0 27.452547 0.34315684 0.5717251 0.22856823 0.0 0.0 0.0 4 1 2 0.1 11.206188 166 -1.9954679750730107 2.6320703 -0.7163235 0.029821074 0.0780847 0.21083325 48519.81
1285 ATVHETSALANYPLFVQ[+0.984]AW rev_sp|P00800|THER_BACTH 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=11262 1 -1 2119.0088 2118.042 3 19 0 0 1.00335 17.258139 2.0914152 32.436221648163205 0.0 0.0 27.080568 0.33850712 0.6367382 0.29823107 0.0 0.0 0.0 5 1 2 0.10526316 21.219847 311 -2.2824120363321 2.6303194 -0.71552676 0.03031809 0.07124108 0.27265385 11052433.0
769 Q[+0.984]GSSTISSVWELGKGPAT rev_D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab 1 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=11090 1 -1 1805.882 1804.8842 4 18 0 0 1.00335 3.0734901 2.7164848 24.707595267541027 0.7772726925343676 0.0 26.825361 0.33531702 0.53369963 0.19838262 0.0 0.0 0.0 5 1 2 0.11111111 17.52401 245 -2.161848085755712 2.6283872 -0.71464914 0.03076923 0.058326714 0.38628626 279437.72
4105 YKC[+57.02]KVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=15289 2 1 4423.376 4423.3667 8 39 0 0 0.0 2.097347 1.1993302 25.523523169887344 2.056698351947066 0.0 33.08132 0.41351652 0.3865151 0.02700141 0.0 0.0 0.0 4 1 2 0.051282052 5.786922 56 -1.4803839651922504 2.6277847 -0.7143759 0.03076923 0.0027932103 0.21083325 361252.12
4370 PSVFLFPPKPKDTLM[+15.9949]ISRTPE D297_PRK5_UTRs_of_pTwist_C4_HC_DENV_mab;D298_PRK5_UTRs_of_pTwist_C10_HC_DENV_mab;D299_PRK5_UTRs_of_pTwist_B10_HC_DENV_mab;D300_PRK5_UTRs_of_pTwist_C8_HC_DENV_mab;D301_PRK5_UTRs_of_pTwist_D5_HC_DENV_mab;D302_PRK5_UTRs_of_pTwist_A11_HC_DENV_mab;D303_PRK5_UTRs_of_pTwist_B7_HC_DENV_mab 7 20250513_EX1_UM1_plitt001_SA_EXT00_C4_G.mzML controllerType=0 controllerNumber=1 scan=23002 1 1 2415.2927 2415.287 4 21 0 0 0.0 2.3248696 3.0674515 19.41894428427751 19.41894428427751 0.0 44.721478 0.5590185 0.6433013 0.084282815 0.0 0.0 0.0 4 1 1 0.04761905 7.1452737 8 -1.8274400135527014 2.6248825 -0.71306187 0.03076923 0.0027932103 0.21083325 12247.68";