#![allow(clippy::missing_panics_doc)]
use crate::{NovoBData, NovoBVersion, test_format};
use std::io::BufReader;
#[test]
fn novob() {
match test_format::<NovoBData>(
BufReader::new(NOVOB_V0_0_1.as_bytes()),
&mzcore::ontology::STATIC_ONTOLOGIES,
false,
false,
Some(NovoBVersion::V0_0_1),
) {
Ok(n) => assert_eq!(n, 20),
Err(e) => {
println!("{e}");
panic!("Failed identified peptides test");
}
}
}
#[test]
fn novob_1() {
match test_format::<NovoBData>(
BufReader::new(NOVOB_V0_0_1_2.as_bytes()),
&mzcore::ontology::STATIC_ONTOLOGIES,
false,
false,
Some(NovoBVersion::V0_0_1),
) {
Ok(n) => assert_eq!(n, 19),
Err(e) => {
println!("{e}");
panic!("Failed identified peptides test");
}
}
}
const NOVOB_V0_0_1: &str = "1 2 2412.424 ['VATTAYDYYSYSVITDAIYNF'] -8.679 0.000000 ['FGVGAENYGDDEEGDIEEIIINIIEK'] -449.920 0.000000
2 2 2412.424 ['STSGDTISEINSEIIEEQVGVNK'] -17.753 0.000000 ['mAITmASTQIEDITDEEIIEIIIEK'] -449.991 0.000000
3 4 1735.869 ['HKDGSTEIKDnKTNR'] 11.023 0.000013 ['CDVNHKIPSNTKVDK'] 0.000 0.077978
4 4 2869.220 ['RPPPPPPSPPPPPEEGPTAPPRPQTYH'] -2.230 0.000000 ['TREPQEPMEHQGGSGPESGQENSTYR'] -0.014 0.000000
5 4 2869.220 ['KTPPPEEEGKEECEGGDAmNENPAEK'] 0.014 0.000000 ['DIGESVEHCEHSKPSCQPSNGNTYR'] 0.003 0.000000
6 4 2894.252 ['RPPGGAEEEEEEYRPEPEGEHSSGMK'] 0.008 0.000000 ['NAGTYKEEEEEEVQSSGDKYNSTYR'] 0.002 0.000000
7 4 2894.252 ['KTPSPSIKPSSSSSSSSSSSSHSHIPIIF'] -30.199 0.000000 ['IVEIHGETAMQGAHGGGGGGSGPNDTSTYR'] -0.045 0.000000
8 4 2951.276 ['GSGGGGGGGRGSGGGGSGSGTTKTSDPGEGSGSGSSR'] 0.024 0.000000 ['GTIGAVFGEHAASGEHGGGSSSGSGGYSSMSGK'] 0.007 0.000000
9 4 1645.895 ['HKPSSTKPVFPPSQK'] 0.000 0.003877 ['NVQGDKKNAIVHVDK'] 0.005 0.000040
10 4 2748.191 ['GSGGGGGGGGGGGGSGGGGAGIGSGGPGHRPGTSCR'] 0.012 0.000000 ['GGENSSEHKPEEQVTGmGQENSTYR'] 0.021 0.000000
11 4 2748.191 ['EGEGEGRPSEETKEMPTPSSSSMATR'] -0.007 0.000000 ['CRPASEIGANAGGHAGSGSGYSETSGSSR'] 0.003 0.000000
12 4 2910.248 ['SSNGGGSGGGGGGGGGGASSSSSSSSSSSSSIRPPK'] -0.002 0.000000 ['KIEEEGDQSGEHSHGGPGSSSGEQQGYR'] 0.008 0.000000
13 3 1735.866 ['HKDGSENVPSNTKVDK'] 0.016 0.023430 ['IANTSDHKPSNTKVDK'] -0.019 0.034890
14 3 1735.866 ['mVPKTDASEHRPKDK'] -0.001 0.008308 ['mVVKTNPEHESPKDK'] 0.008 0.000015
15 3 2894.246 ['GQCGEYGSGGGGGGGGGAGGGGGGGGGGGGGGGGIGAGGGm'] 0.152 0.000000 ['VHQKEGESSEAGHYPGSYGSGNESTYR'] -0.002 0.000000
16 3 2894.246 ['FSAGSCGDIKEESSPCPESEEEIIQK'] -0.014 0.000000 ['KSKGANDEADSSEHSGDYYQEEPTIR'] -0.013 0.000000
17 3 2951.272 ['SCYTTSSSSSSSSSSSSSSSHEEIQIKR'] 0.002 0.000000 ['FGIAANDTDSSSSSSGSPSPISSSSSGNSHR'] -0.002 0.000000
18 3 2951.272 ['SSSSSSNGSSSSSSSSSSSSSSSNVEEPIRD'] 0.074 0.000000 ['KDEAYNKEDDGSQTSGEDNEEINNIR'] 0.005 0.000000
206 4 2388.897 [''] 2388.897 0.000000 [''] 2388.897 0.000000
189 3 1269.642 ['HEyGIRRNyqmyIIDqqGVYIVMGTSqPtSLIPH'] -2104.704 0.000000 [''] 1269.642 0.000000";
const NOVOB_V0_0_1_2: &str = "mcount charge pepmass senten delta_mass prob senten_reverse delta_mass_reverse prob_reverse
34177 3 2510.135 ['QAIEDAAVFSEDEIGMSGDEIFR'] 0.009 0.000000 ['DITETEISIDEFSNNPADYVEK'] 0.000 0.000000
34178 2 1708.867 ['IIVDHSIVEEAEFAR'] -0.011 0.005734 ['QSSEIYEFIEEIIK'] 0.010 0.000000
34179 3 1334.648 ['KPIQPDADQGER'] -0.011 0.000025 ['QSDPIENVAQPR'] -0.010 0.000011
34180 2 1309.744 ['IIIIIQADNMGK'] 0.001 0.000001 ['IKPIIITCDEK'] -0.984 0.000009
34181 3 1136.663 ['KPFPIPSIEK'] 0.002 0.037508 ['EEVPKPSIEK'] 0.054 0.021027
34182 3 1912.458 ['IIDHIIDEIEDIDIMR'] -21.524 0.000000 ['mDAEDHIDEIIEIIEK'] 2.558 0.000000
34183 2 742.599 ['EQIDVR'] 2.217 0.000001 ['IGPDSFK'] -1.780 0.000001
34184 2 878.276 ['KPVPPPHIPSESVNGEIPSIGPFGIMPmR'] -2199.306 0.000000 ['RSPPIPVK'] 3.736 0.000000
34185 2 1136.663 ['FIIVVHQTAK'] -0.007 0.003520 ['VFPSNIPIIR'] -0.007 0.000363
34186 3 1565.657 ['YHECVNSQESFGK'] 0.000 0.000066 ['INDFDDFSDPSGAGK'] -0.005 0.000000
34187 3 1983.839 ['ISIISIITGTHTVTAGGSSAICFTTSVGPSPAQMMEGAFTEI'] -2238.223 0.000000 ['ISIEGHEEFADSEANHAF'] -0.021 0.000000
34188 3 1481.718 ['YHIVAGSDGTPIDR'] -0.006 0.000001 ['ENAPAEEIIDASNK'] 0.017 0.000011
34189 2 1793.913 ['IISVIEGNAGHIGETmR'] 0.004 0.000000 ['VQDAFIVFVYNAEAAR'] 0.004 0.000000
34190 3 1169.739 ['SVIIPPPIPKK'] -0.014 0.000929 ['KGTPIHIVPVK'] 0.010 0.004937
34191 2 953.434 ['EAPMGDPQK'] 0.005 0.000206 ['WPPMPCGK'] 0.009 0.042429
34192 3 1343.574 ['YHGDPENMPFR'] 0.003 0.006334 ['DTSNPEYHPFR'] -0.015 0.000345
34193 3 1980.882 ['IIQQIIVEAIINHVGDVIMSCPTVGKPPFVVPFMEPDIPVFPFFVMPGPFDAQ'] -3893.128 0.000000 ['KISAIINPIIIWEEIIK'] 6.689 0.000000
34194 3 2288.015 ['KIAAIVEECGECPAGEPGTTCEDGGPVMEAPSmPIQ'] -1496.626 0.000000 ['QTQCSCQASCNCISGSSCAPSCCS'] -449.926 0.000000
34195 2 1254.662 ['EIIIDADIIMK'] -0.027 0.000112 ['EQNAIVIIDMK'] -0.002 0.000184";