[
{
"id": "minimal_protein",
"label": "Minimal protein",
"description": "Official minimal input shape: one 20-residue protein, one seed, and no external MSA or template search.",
"source_url": "https://github.com/aurekaresearch/OpenDDE/blob/ddfa1df8aff1babf1fddac4247b7d2351bd0ce9f/docs/infer_json_format.md",
"values": {
"input_json": "[\n {\n \"name\": \"example_job\",\n \"modelSeeds\": [101],\n \"sequences\": [\n {\n \"proteinChain\": {\n \"sequence\": \"ACDEFGHIKLMNPQRSTVWY\",\n \"count\": 1\n }\n }\n ]\n }\n]",
"samples": 1,
"use_msa": false,
"use_template": false,
"use_rna_msa": false,
"input_mode": "text"
}
},
{
"id": "synthetic_protein_200",
"label": "Synthetic protein \u00b7 200 aa",
"description": "Official 200-residue single-chain example, reduced to one sample for an economical ready-to-run preset.",
"source_url": "https://github.com/aurekaresearch/OpenDDE/blob/ddfa1df8aff1babf1fddac4247b7d2351bd0ce9f/examples/protein_200.json",
"values": {
"input_json": "[\n {\n \"name\": \"synthetic_protein_200\",\n \"modelSeeds\": [101],\n \"sequences\": [\n {\n \"proteinChain\": {\n \"sequence\": \"ACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWYACDEFGHIKLMNPQRSTVWY\",\n \"count\": 1\n }\n }\n ]\n }\n]",
"samples": 1,
"use_msa": false,
"use_template": false,
"use_rna_msa": false,
"input_mode": "text"
}
},
{
"id": "protein_dna_ligand_7pzb",
"label": "Protein\u2013DNA\u2013ligand \u00b7 7PZB",
"description": "Official no-MSA co-folding example with a protein dimer, two DNA duplex components, and CCD ligand PCG.",
"source_url": "https://github.com/aurekaresearch/OpenDDE/blob/ddfa1df8aff1babf1fddac4247b7d2351bd0ce9f/examples/example_without_msa.json",
"values": {
"input_json": "[\n {\n \"name\": \"7pzb_need_search_msa\",\n \"sequences\": [\n {\n \"proteinChain\": {\n \"sequence\": \"MAEVIRSSAFWRSFPIFEEFDSETLCELSGIASYRKWSAGTVIFQRGDQGDYMIVVVSGRIKLSLFTPQGRELMLRQHEAGALFGEMALLDGQPRSADATAVTAAEGYVIGKKDFLALITQRPKTAEAVIRFLCAQLRDTTDRLETIALYDLNARVARFFLATLRQIHGSEMPQSANLRLTLSQTDIASILGASRPKVNRAILSLEESGAIKRADGIICCNVGRLLSIADPEEDLEHHHHHHHH\",\n \"count\": 2\n }\n },\n {\n \"dnaSequence\": {\n \"sequence\": \"CTAGGTAACATTACTCGCG\",\n \"count\": 2\n }\n },\n {\n \"dnaSequence\": {\n \"sequence\": \"GCGAGTAATGTTAC\",\n \"count\": 2\n }\n },\n {\n \"ligand\": {\n \"ligand\": \"CCD_PCG\",\n \"count\": 2\n }\n }\n ]\n }\n]",
"seeds": "101",
"samples": 1,
"use_msa": false,
"use_template": false,
"use_rna_msa": false,
"input_mode": "text"
}
}
]