[
{
"id": "protein_msa_server",
"label": "Protein \u00b7 MSA server",
"description": "Official protein example, with the public MSA server enabled because the YAML does not provide an MSA.",
"source_url": "https://github.com/jwohlwend/boltz/blob/b1ebfc46ecf57f5414e0d1a6f9027bbb122c53bc/examples/prot.yaml",
"values": {
"job_name": "boltz2-protein",
"yaml_spec": "version: 1 # Optional, defaults to 1\nsequences:\n - protein:\n id: A\n sequence: QLEDSEVEAVAKGLEEMYANGVTEDNFKNYVKNNFAQQEISSVEEELNVNISDSCVANKIKDEFFAMISISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCG\n",
"use_msa_server": true,
"input_mode": "text"
}
},
{
"id": "protein_single_sequence",
"label": "Protein \u00b7 single sequence",
"description": "Official protein example that explicitly disables MSA input; it runs without an MSA server.",
"source_url": "https://github.com/jwohlwend/boltz/blob/b1ebfc46ecf57f5414e0d1a6f9027bbb122c53bc/examples/prot_no_msa.yaml",
"values": {
"job_name": "boltz2-protein-no-msa",
"yaml_spec": "version: 1 # Optional, defaults to 1\nsequences:\n - protein:\n id: A\n sequence: QLEDSEVEAVAKGLEEMYANGVTEDNFKNYVKNNFAQQEISSVEEELNVNISDSCVANKIKDEFFAMISISAIVKAAQKKAWKELAVTVLRFAKANGLKTNAIIVAGQLALWAVQCG\n msa: empty\n",
"use_msa_server": false,
"input_mode": "text"
}
},
{
"id": "protein_multimer",
"label": "Protein multimer",
"description": "Official two-chain protein-complex example, with missing MSAs generated by the public server.",
"source_url": "https://github.com/jwohlwend/boltz/blob/b1ebfc46ecf57f5414e0d1a6f9027bbb122c53bc/examples/multimer.yaml",
"values": {
"job_name": "boltz2-multimer",
"yaml_spec": "version: 1 # Optional, defaults to 1\nsequences:\n - protein:\n id: A\n sequence: MAHHHHHHVAVDAVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLDGSSGSGTPEERLLRAIFGEKA\n - protein:\n id: B\n sequence: MRYAFAAEATTCNAFWRNVDMTVTALYEVPLGVCTQDPDRWTTTPDDEAKTLCRACPRRWLCARDAVESAGAEGLWAGVVIPESGRARAFALGQLRSLAERNGYPVRDHRVSAQSA\n",
"use_msa_server": true,
"input_mode": "text"
}
},
{
"id": "cyclic_protein",
"label": "Cyclic protein",
"description": "Official cyclic-protein example using Boltz's native cyclic flag.",
"source_url": "https://github.com/jwohlwend/boltz/blob/b1ebfc46ecf57f5414e0d1a6f9027bbb122c53bc/examples/cyclic_prot.yaml",
"values": {
"job_name": "boltz2-cyclic-protein",
"yaml_spec": "version: 1 # Optional, defaults to 1\nsequences:\n - protein:\n id: A\n sequence: QLEDSEVEAVAKG\n cyclic: true\n",
"use_msa_server": true,
"input_mode": "text"
}
},
{
"id": "protein_ligand_affinity",
"label": "Protein\u2013ligand affinity",
"description": "Official protein\u2013ligand example requesting Boltz-2's affinity property for the ligand.",
"source_url": "https://github.com/jwohlwend/boltz/blob/b1ebfc46ecf57f5414e0d1a6f9027bbb122c53bc/examples/affinity.yaml",
"values": {
"job_name": "boltz2-affinity",
"yaml_spec": "version: 1 # Optional, defaults to 1\nsequences:\n - protein:\n id: A\n sequence: MVTPEGNVSLVDESLLVGVTDEDRAVRSAHQFYERLIGLWAPAVMEAAHELGVFAALAEAPADSGELARRLDCDARAMRVLLDALYAYDVIDRIHDTNGFRYLLSAEARECLLPGTLFSLVGKFMHDINVAWPAWRNLAEVVRHGARDTSGAESPNGIAQEDYESLVGGINFWAPPIVTTLSRKLRASGRSGDATASVLDVGCGTGLYSQLLLREFPRWTATGLDVERIATLANAQALRLGVEERFATRAGDFWRGGWGTGYDLVLFANIFHLQTPASAVRLMRHAAACLAPDGLVAVVDQIVDADREPKTPQDRFALLFAASMTNTGGGDAYTFQEYEEWFTAAGLQRIETLDTPMHRILLARRATEPSAVPEGQASENLYFQ\n - ligand:\n id: B\n smiles: 'N[C@@H](Cc1ccc(O)cc1)C(=O)O'\nproperties:\n - affinity:\n binder: B\n",
"use_msa_server": true,
"input_mode": "text"
}
}
]