bedpull 0.3.0

bedpull - Pull the query sequence from bam or fasta references using a bed file
Documentation 
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# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2024"
name = "bedpull"
version = "0.3.0"
authors = ["James M. Ferguson <j.ferguson@garvan.org.au>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "bedpull - Pull the query sequence from bam or fasta references using a bed file"
readme = "README.md"
keywords = [
    "bed",
    "bam",
    "bioinformatics",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "MIT"
repository = "https://github.com/Psy-Fer/bedpull"

[lib]
name = "bedpull"
path = "src/lib.rs"

[[bin]]
name = "bedpull"
path = "src/main.rs"

[[test]]
name = "integration"
path = "tests/integration.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.clap]
version = "4"
features = [
    "derive",
    "cargo",
    "wrap_help",
]

[dependencies.csv]
version = "1.3"

[dependencies.itertools]
version = "0.11"

[dependencies.noodles]
version = "0.111.0"
features = [
    "core",
    "bgzf",
    "bam",
    "sam",
    "bed",
    "fasta",
    "fastq",
    "cram",
]

[dev-dependencies.tempfile]
version = "3"