bedpull 0.3.0

bedpull - Pull the query sequence from bam or fasta references using a bed file
Documentation
# Generated by Cargo
# will have compiled files and executables
debug
target

# These are backup files generated by rustfmt
**/*.rs.bk

# MSVC Windows builds of rustc generate these, which store debugging information
*.pdb

# Generated by cargo mutants
# Contains mutation testing data
**/mutants.out*/

# RustRover
#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
#  and can be added to the global gitignore or merged into this file.  For a more nuclear
#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/


# Added by cargo

/target
CLAUDE.md
TODO.md
/fail*
*.bam
/docs/book/
*.paf.idx
bedpull_wishlist.md

# Benchmark harness: local config (absolute paths, machine-specific) and
# generated output/cache are not checked in — only the scripts/templates are.
/benchmark/config.env
/benchmark/out/
/benchmark/__pycache__/