Struct ExtractConfig 

pub struct ExtractConfig {
    pub pattern: Option<BarcodePattern>,
    pub pattern2: Option<BarcodePattern>,
    pub umi_separator: u8,
    pub quality_filter_threshold: Option<u8>,
    pub quality_encoding: QualityEncoding,
    pub whitelist: Option<HashSet<Vec<u8>>>,
    pub correction_map: Option<HashMap<Vec<u8>, Vec<u8>>>,
    pub blacklist: Option<HashSet<Vec<u8>>>,
    pub ignore_read_pair_suffixes: bool,
    pub reconcile_pairs: bool,
}

Configuration for the extract command.

Fields

pattern: Option<BarcodePattern>

pattern2: Option<BarcodePattern>

umi_separator: u8

quality_filter_threshold: Option<u8>

quality_encoding: QualityEncoding

whitelist: Option<HashSet<Vec<u8>>>

correction_map: Option<HashMap<Vec<u8>, Vec<u8>>>

blacklist: Option<HashSet<Vec<u8>>>

ignore_read_pair_suffixes: bool

reconcile_pairs: bool

Trait Implementations

impl Clone for ExtractConfig

fn clone(&self) -> ExtractConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ExtractConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.