Enum BarcodePattern 

pub enum BarcodePattern {
    String(StringPattern),
    Regex(RegexPattern),
}

A parsed barcode pattern that knows how to extract UMI/cell/sample bases from a read.

Variants

String(StringPattern)

Regex(RegexPattern)

Implementations

impl BarcodePattern

pub fn extract( &self, sequence: &[u8], quality: &[u8], ) -> Result<ExtractionResult, ExtractError>

Errors

Returns error if the read is too short (string method) or doesn’t match (regex method).

Trait Implementations

impl Clone for BarcodePattern

fn clone(&self) -> BarcodePattern

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BarcodePattern

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.