List of all items

Structs

• builder::buckets::Bucket
• builder::buckets::BucketRef
• builder::buckets::BucketStatistics
• builder::buckets::ClassifiedBuckets
• builder::cf_seg::CfSegData
• builder::config::BuildConfiguration
• builder::dictionary_builder::BucketMetadata
• builder::dictionary_builder::DictionaryBuilder
• builder::encode::Encoder
• builder::external_sort::BucketScan
• builder::external_sort::ExternalSorter
• builder::external_sort::FileBucketIter
• builder::external_sort::FileTuples
• builder::external_sort::MergeResult
• builder::external_sort::MinimizerTupleExternal
• builder::external_sort::SequentialTupleReader
• builder::minimizer_tuples::MinimizerTuple
• dictionary::Dictionary
• hasher::DeterministicHasher
• kmer::Kmer
• minimizer::MinimizerInfo
• minimizer::MinimizerIterator
• minimizers_control_map::MinimizerControl
• minimizers_control_map::MinimizersControlMap
• minimizers_control_map::MinimizersControlMapBuilder
• offsets::DecodedOffset
• offsets::EliasFanoOffsets
• offsets::OffsetsVector
• partitioned_mphf::PartitionedMphf
• serialization::DictionarySerializationHeader
• serialization::MphfContainerHeader
• serialization::MphfPartitionEntry
• sparse_and_skew_index::SkewIndex
• sparse_and_skew_index::SparseAndSkewIndex
• spectrum_preserving_string_set::SpectrumPreservingStringSet
• streaming_query::LookupResult
• streaming_query::StreamingQuery
• streaming_query::StreamingQueryEngine
• streaming_query::StreamingQueryStats

Enums

• builder::buckets::BucketType
• encoding::EncodingError
• minimizers_control_map::BucketType
• serialization::SerializationError

Traits

• kmer::KmerBits

Macros

• dispatch_on_k

Functions

• builder::buckets::classify_into_buckets
• builder::buckets::classify_into_buckets_inplace
• builder::cf_seg::parse_cf_seg
• builder::minimizer_tuples::compute_minimizer_tuples
• builder::minimizer_tuples::compute_minimizer_tuples_external
• builder::minimizer_tuples::compute_minimizer_tuples_external_file
• builder::minimizer_tuples::estimate_memory_bytes
• builder::minimizer_tuples::needs_external_sorting
• builder::parse::count_sequences
• builder::parse::parse_sequences
• builder::parse::validate_dna_sequence
• constants::ceil_log2
• constants::is_valid_k
• encoding::complement_base
• encoding::decode_base
• encoding::decode_string
• encoding::encode_base
• encoding::encode_sequence
• encoding::encode_string
• mphf_config::build_mphf_from_slice
• mphf_config::build_mphf_from_slice_mt
• mphf_config::build_mphf_from_vec
• mphf_config::mphf_hasher
• mphf_config::mphf_params
• mphf_config::read_mphf
• serialization::index_file_path
• serialization::mphf_container_path
• serialization::read_mphf_container
• serialization::write_mphf_container
• version

Type Aliases

• kmer::Kmer21
• kmer::Kmer31
• kmer::Kmer63
• mphf_config::Mphf
• mphf_config::MphfHasher
• serialization::SerializationResult

Constants

• builder::buckets::MIN_BUCKET_SIZE
• builder::external_sort::GIB
• builder::external_sort::TUPLE_SIZE_BYTES
• constants::AVG_PARTITION_SIZE
• constants::BACKWARD_ORIENTATION
• constants::DEFAULT_LAMBDA
• constants::DEFAULT_RAM_LIMIT_GIB
• constants::DEFAULT_SEED
• constants::FORWARD_ORIENTATION
• constants::INVALID_UINT64
• constants::MAX_K
• constants::MAX_L
• constants::MIN_K
• constants::MIN_L
• constants::VALID_K_VALUES
• constants::VERSION