List of all items
Structs
- cmd::ComputeParameters
- collection::Collection
- collection::CollectionSet
- encodings::Colors
- encodings::Indices
- ffi::cmd::compute::SourmashComputeParameters
- ffi::hyperloglog::SourmashHyperLogLog
- ffi::index::SourmashSearchResult
- ffi::minhash::SourmashKmerMinHash
- ffi::nodegraph::SourmashNodegraph
- ffi::signature::SourmashSignature
- ffi::storage::SourmashZipStorage
- ffi::utils::Panic
- ffi::utils::SourmashStr
- index::GatherResult
- index::linear::LinearIndex
- manifest::Manifest
- manifest::Record
- selection::Picklist
- selection::Selection
- signature::Iter
- signature::IterMut
- signature::SeqToHashes
- signature::Signature
- sketch::hyperloglog::HyperLogLog
- sketch::minhash::KmerMinHash
- sketch::minhash::KmerMinHashBTree
- sketch::nodegraph::Nodegraph
- storage::DatasetInfo
- storage::FSStorage
- storage::InnerStorage
- storage::MemStorage
- storage::SigStore
- storage::ZipStorage
Enums
- encodings::HashFunctions
- errors::ReadDataError
- errors::SourmashError
- errors::SourmashErrorCode
- ffi::HashFunctions
- selection::PickStyle
- sketch::Sketch
- storage::StorageArgs
- storage::StorageError
Traits
- ffi::utils::ForeignObject
- index::Index
- prelude::Comparable
- prelude::FromFactory
- prelude::ReadData
- prelude::ToWriter
- prelude::Update
- selection::Select
- signature::SigsTrait
- storage::Storage
Functions
- _hash_murmur
- ani_utils::ani_ci_from_containment
- ani_utils::ani_from_containment
- cmd::build_template
- encodings::aa_to_dayhoff
- encodings::aa_to_hp
- encodings::revcomp
- encodings::to_aa
- encodings::translate_codon
- ffi::cmd::compute::computeparams_dayhoff
- ffi::cmd::compute::computeparams_dna
- ffi::cmd::compute::computeparams_free
- ffi::cmd::compute::computeparams_hp
- ffi::cmd::compute::computeparams_ksizes
- ffi::cmd::compute::computeparams_ksizes_free
- ffi::cmd::compute::computeparams_new
- ffi::cmd::compute::computeparams_num_hashes
- ffi::cmd::compute::computeparams_protein
- ffi::cmd::compute::computeparams_scaled
- ffi::cmd::compute::computeparams_seed
- ffi::cmd::compute::computeparams_set_dayhoff
- ffi::cmd::compute::computeparams_set_dna
- ffi::cmd::compute::computeparams_set_hp
- ffi::cmd::compute::computeparams_set_ksizes
- ffi::cmd::compute::computeparams_set_num_hashes
- ffi::cmd::compute::computeparams_set_protein
- ffi::cmd::compute::computeparams_set_scaled
- ffi::cmd::compute::computeparams_set_seed
- ffi::cmd::compute::computeparams_set_track_abundance
- ffi::cmd::compute::computeparams_track_abundance
- ffi::hash_murmur
- ffi::hyperloglog::hll_add_hash
- ffi::hyperloglog::hll_add_sequence
- ffi::hyperloglog::hll_cardinality
- ffi::hyperloglog::hll_containment
- ffi::hyperloglog::hll_free
- ffi::hyperloglog::hll_from_buffer
- ffi::hyperloglog::hll_from_path
- ffi::hyperloglog::hll_intersection_size
- ffi::hyperloglog::hll_ksize
- ffi::hyperloglog::hll_matches
- ffi::hyperloglog::hll_merge
- ffi::hyperloglog::hll_new
- ffi::hyperloglog::hll_save
- ffi::hyperloglog::hll_similarity
- ffi::hyperloglog::hll_to_buffer
- ffi::hyperloglog::hll_update_mh
- ffi::hyperloglog::hll_with_error_rate
- ffi::index::searchresult_filename
- ffi::index::searchresult_free
- ffi::index::searchresult_score
- ffi::index::searchresult_signature
- ffi::minhash::kmerminhash_add_from
- ffi::minhash::kmerminhash_add_hash
- ffi::minhash::kmerminhash_add_hash_with_abundance
- ffi::minhash::kmerminhash_add_many
- ffi::minhash::kmerminhash_add_protein
- ffi::minhash::kmerminhash_add_sequence
- ffi::minhash::kmerminhash_add_word
- ffi::minhash::kmerminhash_angular_similarity
- ffi::minhash::kmerminhash_clear
- ffi::minhash::kmerminhash_count_common
- ffi::minhash::kmerminhash_dayhoff
- ffi::minhash::kmerminhash_disable_abundance
- ffi::minhash::kmerminhash_enable_abundance
- ffi::minhash::kmerminhash_free
- ffi::minhash::kmerminhash_get_abunds
- ffi::minhash::kmerminhash_get_mins
- ffi::minhash::kmerminhash_get_mins_size
- ffi::minhash::kmerminhash_hash_function
- ffi::minhash::kmerminhash_hash_function_set
- ffi::minhash::kmerminhash_hp
- ffi::minhash::kmerminhash_intersection
- ffi::minhash::kmerminhash_intersection_union_size
- ffi::minhash::kmerminhash_is_compatible
- ffi::minhash::kmerminhash_is_protein
- ffi::minhash::kmerminhash_jaccard
- ffi::minhash::kmerminhash_ksize
- ffi::minhash::kmerminhash_max_hash
- ffi::minhash::kmerminhash_md5sum
- ffi::minhash::kmerminhash_merge
- ffi::minhash::kmerminhash_new
- ffi::minhash::kmerminhash_num
- ffi::minhash::kmerminhash_remove_from
- ffi::minhash::kmerminhash_remove_hash
- ffi::minhash::kmerminhash_remove_many
- ffi::minhash::kmerminhash_seed
- ffi::minhash::kmerminhash_seq_to_hashes
- ffi::minhash::kmerminhash_set_abundances
- ffi::minhash::kmerminhash_similarity
- ffi::minhash::kmerminhash_slice_free
- ffi::minhash::kmerminhash_track_abundance
- ffi::minhash::sourmash_aa_to_dayhoff
- ffi::minhash::sourmash_aa_to_hp
- ffi::minhash::sourmash_translate_codon
- ffi::nodegraph::nodegraph_buffer_free
- ffi::nodegraph::nodegraph_count
- ffi::nodegraph::nodegraph_count_kmer
- ffi::nodegraph::nodegraph_expected_collisions
- ffi::nodegraph::nodegraph_free
- ffi::nodegraph::nodegraph_from_buffer
- ffi::nodegraph::nodegraph_from_path
- ffi::nodegraph::nodegraph_get
- ffi::nodegraph::nodegraph_get_kmer
- ffi::nodegraph::nodegraph_hashsizes
- ffi::nodegraph::nodegraph_ksize
- ffi::nodegraph::nodegraph_matches
- ffi::nodegraph::nodegraph_new
- ffi::nodegraph::nodegraph_noccupied
- ffi::nodegraph::nodegraph_ntables
- ffi::nodegraph::nodegraph_save
- ffi::nodegraph::nodegraph_to_buffer
- ffi::nodegraph::nodegraph_update
- ffi::nodegraph::nodegraph_update_mh
- ffi::nodegraph::nodegraph_with_tables
- ffi::signature::signature_add_protein
- ffi::signature::signature_add_sequence
- ffi::signature::signature_eq
- ffi::signature::signature_first_mh
- ffi::signature::signature_free
- ffi::signature::signature_from_params
- ffi::signature::signature_get_filename
- ffi::signature::signature_get_license
- ffi::signature::signature_get_mhs
- ffi::signature::signature_get_name
- ffi::signature::signature_len
- ffi::signature::signature_new
- ffi::signature::signature_push_mh
- ffi::signature::signature_save_json
- ffi::signature::signature_set_filename
- ffi::signature::signature_set_mh
- ffi::signature::signature_set_name
- ffi::signature::signatures_load_buffer
- ffi::signature::signatures_load_path
- ffi::signature::signatures_save_buffer
- ffi::storage::zipstorage_filenames
- ffi::storage::zipstorage_free
- ffi::storage::zipstorage_list_sbts
- ffi::storage::zipstorage_load
- ffi::storage::zipstorage_new
- ffi::storage::zipstorage_path
- ffi::storage::zipstorage_set_subdir
- ffi::storage::zipstorage_subdir
- ffi::utils::landingpad
- ffi::utils::set_panic_hook
- ffi::utils::sourmash_err_clear
- ffi::utils::sourmash_err_get_backtrace
- ffi::utils::sourmash_err_get_last_code
- ffi::utils::sourmash_err_get_last_message
- ffi::utils::sourmash_init
- ffi::utils::sourmash_str_free
- ffi::utils::sourmash_str_from_cstr
- index::calculate_gather_stats
- index::search::search_minhashes
- index::search::search_minhashes_containment
- index::search::search_minhashes_find_best
- sketch::hyperloglog::estimators::counts
- sketch::hyperloglog::estimators::joint_mle
- sketch::hyperloglog::estimators::mle
- sketch::minhash::max_hash_for_scaled
- sketch::minhash::scaled_for_max_hash