Struct Nodegraph 

pub struct Nodegraph { /* private fields */ }

Implementations

impl Nodegraph

pub fn new(tablesizes: &[usize], ksize: usize) -> Nodegraph

pub fn with_tables(tablesize: usize, n_tables: usize, ksize: usize) -> Nodegraph

pub fn count(&mut self, hash: u64) -> bool

pub fn get(&self, hash: u64) -> usize

pub fn expected_collisions(&self) -> f64

pub fn tablesize(&self) -> usize

pub fn noccupied(&self) -> usize

pub fn matches(&self, mh: &KmerMinHash) -> usize

pub fn ntables(&self) -> usize

pub fn ksize(&self) -> usize

pub fn into_bitsets(self) -> Vec<FixedBitSet>

pub fn save<P: AsRef<Path>>(&self, path: P) -> Result<(), Error>

pub fn save_to_writer<W>(&self, wtr: &mut W) -> Result<(), Error>

where W: Write,

pub fn from_reader<R>(rdr: R) -> Result<Nodegraph, Error>

where R: Read,

pub fn from_path<P: AsRef<Path>>(path: P) -> Result<Nodegraph, Error>

pub fn tablesizes(&self) -> Vec<u64>

pub fn n_occupied_bins(&self) -> usize

pub fn unique_kmers(&self) -> usize

pub fn similarity(&self, other: &Nodegraph) -> f64

pub fn containment(&self, other: &Nodegraph) -> f64

Trait Implementations

impl Clone for Nodegraph

fn clone(&self) -> Nodegraph

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Nodegraph

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Nodegraph

fn default() -> Nodegraph

Returns the “default value” for a type.

impl PartialEq for Nodegraph

fn eq(&self, other: &Nodegraph) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Update<Nodegraph> for KmerMinHash

fn update(&self, other: &mut Nodegraph) -> Result<(), Error>

impl Update<Nodegraph> for KmerMinHashBTree

fn update(&self, other: &mut Nodegraph) -> Result<(), Error>

impl Update<Nodegraph> for Nodegraph

fn update(&self, other: &mut Nodegraph) -> Result<(), Error>