Struct SeedPolicy 

pub struct SeedPolicy {
    pub seed_len: usize,
    pub seed_interval: usize,
    pub max_hits: usize,
    pub seed_type: SeedType,
    pub constraints: [Constraint; 3],
}

Seed policy configuration

Fields

seed_len: usize

Seed length

seed_interval: usize

Seed spacing interval

max_hits: usize

Maximum seed hits per seed

seed_type: SeedType

Seed type

constraints: [Constraint; 3]

Constraints per zone

Implementations

impl SeedPolicy

pub fn new() -> Self

Create default seed policy

pub fn is_valid_seed_pos(&self, read_len: usize, pos: usize) -> bool

Check if a seed position is valid

Trait Implementations

impl Clone for SeedPolicy

fn clone(&self) -> SeedPolicy

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SeedPolicy

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for SeedPolicy

fn default() -> Self

Returns the “default value” for a type.