Struct Constraint 

pub struct Constraint {
    pub edits: i32,
    pub mms: i32,
    pub ins: i32,
    pub dels: i32,
    pub penalty: Score,
    pub edits_ceil: i32,
    pub mms_ceil: i32,
    pub ins_ceil: i32,
    pub dels_ceil: i32,
    pub penalty_ceil: Score,
}

Constraints on alignment edits

Fields

edits: i32

Number of edits permitted

mms: i32

Mismatches permitted

ins: i32

Insertions permitted

dels: i32

Deletions permitted

penalty: Score

Total penalty permitted

edits_ceil: i32

Ceiling values (maximum allowed) Maximum edits permitted

mms_ceil: i32

Maximum mismatches permitted

ins_ceil: i32

Maximum insertions permitted

dels_ceil: i32

Maximum deletions permitted

penalty_ceil: Score

Maximum penalty permitted

Implementations

impl Constraint

pub fn new() -> Self

Create a new constraint with all values at zero

pub fn satisfied(&self) -> bool

Check if constraint is satisfied

pub fn add_mismatch(&mut self, penalty: Score)

Add a mismatch

pub fn add_insertion(&mut self, penalty: Score)

Add an insertion

pub fn add_deletion(&mut self, penalty: Score)

Add a deletion

Trait Implementations

impl Clone for Constraint

fn clone(&self) -> Constraint

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for Constraint

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for Constraint

fn default() -> Self

Returns the “default value” for a type.

impl PartialEq for Constraint

fn eq(&self, other: &Constraint) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Eq for Constraint

impl StructuralPartialEq for Constraint