Struct SeedAligner 

pub struct SeedAligner { /* private fields */ }

Seed aligner that searches for seed matches

Implementations

impl SeedAligner

pub fn new(policy: SeedPolicy) -> Self

Create a new seed aligner

pub fn with_seed_sets(policy: SeedPolicy, seed_sets: usize) -> Self

Create a seed aligner with custom number of seed sets

pub fn search<I: FmIndex>( &mut self, index: &I, read: &[Nuc], ) -> Result<SeedResults>

Search for seeds in a read using multiple seed sets

This implements a multi-set seed search. If the first seed set finds no matches, it tries additional sets with different offsets to handle reads with SNPs that break some seeds.

Trait Implementations

impl Default for SeedAligner

fn default() -> Self

Returns the “default value” for a type.