Struct SwSseAligner 

pub struct SwSseAligner { /* private fields */ }

SIMD-accelerated Smith-Waterman aligner

Implementations

impl SwSseAligner

pub fn new(read: &[Nuc], params: SwParams) -> Self

Create a new SIMD aligner

pub fn align(&mut self, reference: &[Nuc]) -> BwtResult<Alignment>

Align a read to a reference using SIMD-accelerated Smith-Waterman

This implements the striped Smith-Waterman algorithm which processes multiple DP cells in parallel using SSE registers.