Struct SwParams 

pub struct SwParams {
    pub match_score: Score,
    pub mismatch_penalty: Score,
    pub gap_open: Score,
    pub gap_extend: Score,
    pub band_width: usize,
    pub min_score: Score,
}

Parameters for Smith-Waterman alignment

Fields

match_score: Score

Match score

mismatch_penalty: Score

Mismatch penalty

gap_open: Score

Gap open penalty

gap_extend: Score

Gap extend penalty

band_width: usize

Band width for banded alignment (0 = no banding)

min_score: Score

Minimum score threshold

Trait Implementations

impl Clone for SwParams

fn clone(&self) -> SwParams

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for SwParams

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for SwParams

fn default() -> Self

Returns the “default value” for a type.

impl PartialEq for SwParams

fn eq(&self, other: &SwParams) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for SwParams

impl Eq for SwParams

impl StructuralPartialEq for SwParams