Struct rust_htslib::htslib::bam_pileup1_t

#[repr(C)]
pub struct bam_pileup1_t {
    pub b: *mut bam1_t,
    pub qpos: i32,
    pub indel: c_int,
    pub level: c_int,
    pub _bitfield_1: __BindgenBitfieldUnit<[u8; 4], u32>,
    pub cd: bam_pileup_cd,
}

@typedef @abstract Structure for one alignment covering the pileup position. @field b pointer to the alignment @field qpos position of the read base at the pileup site, 0-based @field indel indel length; 0 for no indel, positive for ins and negative for del @field level the level of the read in the "viewer" mode @field is_del 1 iff the base on the padded read is a deletion @field is_head ??? @field is_tail ??? @field is_refskip ??? @field aux ???

@discussion See also bam_plbuf_push() and bam_lplbuf_push(). The difference between the two functions is that the former does not set bam_pileup1_t::level, while the later does. Level helps the implementation of alignment viewers, but calculating this has some overhead.

Fields

b: *mut bam1_t

qpos: i32

indel: c_int

level: c_int

_bitfield_1: __BindgenBitfieldUnit<[u8; 4], u32>

cd: bam_pileup_cd

Methods

impl bam_pileup1_t

pub fn is_del(&self) -> u32

pub fn set_is_del(&mut self, val: u32)

pub fn is_head(&self) -> u32

pub fn set_is_head(&mut self, val: u32)

pub fn is_tail(&self) -> u32

pub fn set_is_tail(&mut self, val: u32)

pub fn is_refskip(&self) -> u32

pub fn set_is_refskip(&mut self, val: u32)

pub fn aux(&self) -> u32

pub fn set_aux(&mut self, val: u32)

pub fn new_bitfield_1(
    is_del: u32,
    is_head: u32,
    is_tail: u32,
    is_refskip: u32,
    aux: u32
) -> __BindgenBitfieldUnit<[u8; 4], u32>

Trait Implementations

impl Copy for bam_pileup1_t

impl Clone for bam_pileup1_t

fn clone(&self) -> bam_pileup1_t

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.