Struct rust_htslib::bcf::Writer

pub struct Writer { /* fields omitted */ }

A VCF/BCF writer.

Methods

impl Writer

fn from_path<P: AsRef<Path>>(
    path: P,
    header: &Header,
    uncompressed: bool,
    vcf: bool
) -> Result<Self, BCFPathError>

Create a new writer that writes to the given path.

Arguments

• path:

fn from_url(
    url: &Url,
    header: &Header,
    uncompressed: bool,
    vcf: bool
) -> Result<Self, BCFError>

fn from_stdout(
    header: &Header,
    uncompressed: bool,
    vcf: bool
) -> Result<Self, BCFError>

fn header(&self) -> &HeaderView

fn empty_record(&self) -> Record

Create empty record for writing to this writer. The record can be reused multiple times.

fn translate(&mut self, record: &mut Record)

Translate record to header of this writer.

fn subset(&mut self, record: &mut Record)

Subset samples of record to match header of this writer.

fn write(&mut self, record: &Record) -> Result<(), WriteError>

Trait Implementations

impl Debug for Writer

fn fmt(&self, __arg_0: &mut Formatter) -> Result

Formats the value using the given formatter.

impl Send for Writer

impl Drop for Writer

fn drop(&mut self)

Executes the destructor for this type.