Struct rust_htslib::bcf::record::Record
[−]
[src]
pub struct Record {
pub inner: *mut bcf1_t,
// some fields omitted
}A BCF record.
New records can be created by the empty_record methods of bcf::Reader and bcf::Writer.
Fields
inner: *mut bcf1_t
Methods
impl Record[src]
fn header(&self) -> &HeaderView[src]
Return associated header.
fn inner(&self) -> &bcf1_t[src]
fn inner_mut(&mut self) -> &mut bcf1_t[src]
fn rid(&self) -> Option<u32>[src]
Get the reference id of the record. To look up the contig name,
use bcf::header::HeaderView::rid2name.
fn pos(&self) -> u32[src]
fn set_pos(&mut self, pos: i32)[src]
Set 0-based position.
fn alleles(&self) -> Vec<&[u8]>[src]
Get alleles. The first allele is the reference allele.
fn qual(&self) -> f32[src]
Get variant quality.
fn set_qual(&mut self, qual: f32)[src]
Set variant quality.
fn info<'a>(&'a mut self, tag: &'a [u8]) -> Info[src]
Get the value of the given info tag.
fn sample_count(&self) -> u32[src]
Get the number of samples.
fn allele_count(&self) -> u32[src]
Get the number of alleles, including reference allele.
fn genotypes(&mut self) -> Result<Genotypes, FormatReadError>[src]
Get genotypes as vector of one Genotype per sample.
fn format<'a>(&'a mut self, tag: &'a [u8]) -> Format[src]
Get the value of the given format tag for each sample.
fn push_format_integer(
&mut self,
tag: &[u8],
data: &[i32]
) -> Result<(), TagWriteError>[src]
&mut self,
tag: &[u8],
data: &[i32]
) -> Result<(), TagWriteError>
Add an integer format tag. Data is a flattened two-dimensional array. The first dimension contains one array for each sample. Returns error if tag is not present in header.
fn push_format_float(
&mut self,
tag: &[u8],
data: &[f32]
) -> Result<(), TagWriteError>[src]
&mut self,
tag: &[u8],
data: &[f32]
) -> Result<(), TagWriteError>
Add a float format tag. Data is a flattened two-dimensional array. The first dimension contains one array for each sample. Returns error if tag is not present in header.
fn push_info_integer(
&mut self,
tag: &[u8],
data: &[i32]
) -> Result<(), TagWriteError>[src]
&mut self,
tag: &[u8],
data: &[i32]
) -> Result<(), TagWriteError>
Add an integer info tag.
fn push_info_float(
&mut self,
tag: &[u8],
data: &[f32]
) -> Result<(), TagWriteError>[src]
&mut self,
tag: &[u8],
data: &[f32]
) -> Result<(), TagWriteError>
Add a float info tag.
fn push_info<T>(
&mut self,
tag: &[u8],
data: &[T],
ht: u32
) -> Result<(), TagWriteError>[src]
&mut self,
tag: &[u8],
data: &[T],
ht: u32
) -> Result<(), TagWriteError>
Add an info tag.
fn trim_alleles(&mut self) -> Result<(), TrimAllelesError>[src]
Remove unused alleles.