Struct ReadTagTableCli 

pub struct ReadTagTableCli {
    pub read_tag_table: Vec<PathBuf>,
    pub rt_read_id_column: String,
    pub rt_cell_column: String,
    pub rt_cell_qual_column: String,
    pub rt_umi_column: String,
    pub rt_umi_qual_column: String,
    pub rt_original_read_id_column: String,
}

Fields

read_tag_table: Vec<PathBuf>

Optional external read-tag table.

Accepted formats:

• binary .bin files written with ReadTagTable::save_binary
• TSV files
• TSV.GZ files

rt_read_id_column: String

rt_cell_column: String

rt_cell_qual_column: String

rt_umi_column: String

rt_umi_qual_column: String

rt_original_read_id_column: String

Implementations

impl ReadTagTableCli

pub fn to_config_for_id(&self, id: usize) -> Result<ReadTagTableConfig>

pub fn to_config(&self) -> Result<ReadTagTableConfig>

pub fn load(&self) -> Result<ReadTagTable>

pub fn load_for_id(&self, id: usize) -> Result<ReadTagTable>

Trait Implementations

impl Args for ReadTagTableCli

fn group_id() -> Option<Id>

Report the ArgGroup::id for this set of arguments

fn augment_args<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate Self via FromArgMatches::from_arg_matches_mut

fn augment_args_for_update<'b>(__clap_app: Command) -> Command

Append to Command so it can instantiate self via FromArgMatches::update_from_arg_matches_mut

impl Clone for ReadTagTableCli

fn clone(&self) -> ReadTagTableCli

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReadTagTableCli

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl FromArgMatches for ReadTagTableCli

fn from_arg_matches(__clap_arg_matches: &ArgMatches) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn from_arg_matches_mut( __clap_arg_matches: &mut ArgMatches, ) -> Result<Self, Error>

Instantiate Self from ArgMatches, parsing the arguments as needed.

fn update_from_arg_matches( &mut self, __clap_arg_matches: &ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.

fn update_from_arg_matches_mut( &mut self, __clap_arg_matches: &mut ArgMatches, ) -> Result<(), Error>

Assign values from ArgMatches to self.