Struct ReadTagTable 

pub struct ReadTagTable { /* private fields */ }

Implementations

impl ReadTagTable

pub fn new() -> Self

pub fn from_path_or_config(config: &ReadTagTableConfig) -> Result<Self>

pub fn from_config(config: &ReadTagTableConfig) -> Result<Self>

pub fn save_binary<P: AsRef<Path>>(&self, path: P) -> Result<()>

pub fn save<P: AsRef<Path>>(&self, path: P) -> Result<()>

pub fn load_binary<P: AsRef<Path>>(path: P) -> Result<Self>

pub fn get(&self, read_id: &str) -> Option<&ReadTagRecord>

pub fn cell_umi_for_read(&self, read_id: &str) -> Option<(String, String)>

pub fn cell_umi_bytes_for_read(&self, read_id: &str) -> Option<(&[u8], &[u8])>

pub fn len(&self) -> usize

pub fn is_empty(&self) -> bool

pub fn pair_counts(&self) -> HashMap<(Vec<u8>, Vec<u8>), u64>

pub fn insert(&mut self, record: ReadTagRecord) -> Option<ReadTagRecord>

pub fn merge(&mut self, other: Self)

pub fn summarize_pairs( &self, min_pair_count: u64, min_cell_umis: u64, ) -> PairStats

pub fn write_tsv<W: Write>(&self, inner: W) -> Result<()>

Trait Implementations

impl Clone for ReadTagTable

fn clone(&self) -> ReadTagTable

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for ReadTagTable

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for ReadTagTable

fn default() -> ReadTagTable

Returns the “default value” for a type.

impl<'de> Deserialize<'de> for ReadTagTable

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl Display for ReadTagTable

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Serialize for ReadTagTable

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.