ContigIterator

ragc_core::contig_iterator

Trait ContigIterator 

Source 
pub trait ContigIterator {
    // Required methods
    fn next_contig(&mut self) -> Result<Option<(String, String, Contig)>>;
    fn reset(&mut self) -> Result<()>;
}
Expand description

Trait for iterating over contigs from various input sources

Required Methods§

Source

fn next_contig(&mut self) -> Result<Option<(String, String, Contig)>>

Get the next contig. Returns None when no more contigs. Returns (sample_name, contig_name, sequence)

Source

fn reset(&mut self) -> Result<()>

Reset the iterator to the beginning (for second pass)

Implementors§