Struct BufferedPansnFileIterator 

pub struct BufferedPansnFileIterator { /* private fields */ }

Iterator that buffers entire file in memory and outputs in sample-grouped order Much faster than random access for files with non-contiguous sample ordering

Implementations

impl BufferedPansnFileIterator

pub fn new(file_path: &Path) -> Result<Self>

Create a new buffered iterator that reads entire file into memory

Trait Implementations

impl ContigIterator for BufferedPansnFileIterator

fn next_contig(&mut self) -> Result<Option<(String, String, Contig)>>

Get the next contig. Returns None when no more contigs. Returns (sample_name, contig_name, sequence)

fn reset(&mut self) -> Result<()>

Reset the iterator to the beginning (for second pass)