Struct MetaPredictor 

pub struct MetaPredictor { /* private fields */ }

Reusable metagenomic gene predictor.

Pre-loads 50 metagenomic models and evaluates qualifying models with Prodigal-compatible state preservation across adjacent model bins.

Implementations

impl MetaPredictor

pub fn new() -> Result<Self, ProdigalError>

Create a new predictor with default config.

pub fn with_config(config: ProdigalConfig) -> Result<Self, ProdigalError>

Create a new predictor with custom config.

pub fn with_thread_pool(pool: Arc<ThreadPool>) -> Result<Self, ProdigalError>

Create a new predictor with default config and a shared Rayon thread pool.

The supplied pool is reused for parallel metagenomic model evaluation. For large inputs, build the pool with at least META_PREDICTOR_STACK_SIZE stack bytes per worker thread.

pub fn with_config_and_thread_pool( config: ProdigalConfig, pool: Arc<ThreadPool>, ) -> Result<Self, ProdigalError>

Create a new predictor with custom config and a shared Rayon thread pool.

The supplied pool is reused for parallel metagenomic model evaluation. For large inputs, build the pool with at least META_PREDICTOR_STACK_SIZE stack bytes per worker thread.

pub fn predict(&self, seq: &[u8]) -> Result<Vec<PredictedGene>, ProdigalError>

Predict genes in the given sequence.

pub fn predict_batch<S>( &self, seqs: &[S], ) -> Result<Vec<Vec<PredictedGene>>, ProdigalError>

where S: AsRef<[u8]> + Sync,

Predict genes in a batch of sequences, preserving input order.