Struct PredictedGene

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pub struct PredictedGene {Show 15 fields
    pub begin: usize,
    pub end: usize,
    pub strand: Strand,
    pub start_codon: StartCodon,
    pub partial: (bool, bool),
    pub rbs_motif: String,
    pub rbs_spacer: String,
    pub gc_content: f64,
    pub confidence: f64,
    pub score: f64,
    pub cscore: f64,
    pub sscore: f64,
    pub rscore: f64,
    pub uscore: f64,
    pub tscore: f64,
}

Expand description

A single predicted gene.

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§begin: usize

1-indexed start position in the input sequence.

§end: usize

1-indexed end position (inclusive).

§strand: Strand

Strand.

§start_codon: StartCodon

Start codon type.

§partial: (bool, bool)

Whether left/right ends are partial (run off sequence edges).

§rbs_motif: String

RBS motif name (e.g. “AGGAG” or “None”).

§rbs_spacer: String

RBS spacer distance (e.g. “3-4bp” or “None”).

§gc_content: f64

GC content of this gene.

§confidence: f64

Confidence score (50.0 - 99.99).

§score: f64

Total score (coding + start).

§cscore: f64

Coding score.

§sscore: f64

Start score (rscore + uscore + tscore).

§rscore: f64

RBS score.

§uscore: f64

Upstream composition score.

§tscore: f64

Start codon type score.

Trait Implementations§

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impl Clone for PredictedGene

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fn clone(&self) -> PredictedGene

Returns a duplicate of the value. Read more

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fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source. Read more

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impl Debug for PredictedGene

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fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter. Read more

Auto Trait Implementations§

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impl UnwindSafe for PredictedGene

Blanket Implementations§

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impl<T> Any for T
where T: 'static + ?Sized,

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fn type_id(&self) -> TypeId

Gets the TypeId of self. Read more

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impl<T> Borrow<T> for T
where T: ?Sized,

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fn borrow(&self) -> &T

Immutably borrows from an owned value. Read more

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impl<T> BorrowMut<T> for T
where T: ?Sized,

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fn borrow_mut(&mut self) -> &mut T

Mutably borrows from an owned value. Read more

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impl<T> CloneToUninit for T
where T: Clone,

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unsafe fn clone_to_uninit(&self, dest: *mut u8)

🔬This is a nightly-only experimental API. (clone_to_uninit)

Performs copy-assignment from self to dest. Read more

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impl<T> From<T> for T

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fn from(t: T) -> T

Returns the argument unchanged.

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impl<T, U> Into for T
where U: From<T>,

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fn into(self) -> U

Calls U::from(self).

That is, this conversion is whatever the implementation of From<T> for U chooses to do.

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impl<T> IntoEither for T

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fn into_either(self, into_left: bool) -> Either<Self, Self>

Converts self into a Left variant of Either<Self, Self> if into_left is true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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fn into_either_with<F>(self, into_left: F) -> Either<Self, Self>
where F: FnOnce(&Self) -> bool,

Converts self into a Left variant of Either<Self, Self> if into_left(&self) returns true. Converts self into a Right variant of Either<Self, Self> otherwise. Read more

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