Struct DNASequence 

pub struct DNASequence {
    pub sequence: Vec<Nucleotide>,
    pub length: usize,
}

DNA sequence representation

Fields

sequence: Vec<Nucleotide>

length: usize

Implementations

impl DNASequence

pub fn new(sequence: Vec<Nucleotide>) -> Self

Create new DNA sequence

pub fn random(length: usize, rng: &mut impl Rng) -> Self

Create random DNA sequence

pub fn complement(&self) -> Self

Get complement sequence

pub fn hybridize(&self, other: &Self) -> f64

Hybridize with another sequence

pub fn mutate(&mut self, mutation_rate: f64, rng: &mut impl Rng)

Mutate sequence

pub fn to_vector(&self) -> Vector

Convert to vector representation

pub fn from_vector(vector: &Vector) -> Self

Create from vector

pub fn pcr_amplify(&self, cycles: usize, efficiency: f64) -> Vec<Self>

PCR amplification simulation

pub fn restrict(&self, cut_site: &[Nucleotide]) -> Vec<Self>

Restriction enzyme cutting

pub fn ligate(&self, other: &Self) -> Self

Ligate with another sequence

Trait Implementations

impl Clone for DNASequence

fn clone(&self) -> DNASequence

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for DNASequence

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl<'de> Deserialize<'de> for DNASequence

fn deserialize<__D>(__deserializer: __D) -> Result<Self, __D::Error>

where __D: Deserializer<'de>,

Deserialize this value from the given Serde deserializer.

impl PartialEq for DNASequence

fn eq(&self, other: &DNASequence) -> bool

Tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

Tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Serialize for DNASequence

fn serialize<__S>(&self, __serializer: __S) -> Result<__S::Ok, __S::Error>

where __S: Serializer,

Serialize this value into the given Serde serializer.

impl StructuralPartialEq for DNASequence