Struct BlastAligner 

pub struct BlastAligner { /* private fields */ }

Seed-and-extend aligner with a validated configuration.

Implementations

impl BlastAligner

pub fn new(config: BlastConfig) -> SeqResult<Self>

Construct a new aligner, validating the configuration.

Errors

• SeqError::InvalidConfiguration if kmer_len == 0.
• SeqError::InvalidParameter if x_drop <= 0.

pub fn config(&self) -> &BlastConfig

Borrow the validated configuration.

pub fn search<T: Eq + Hash>( &self, query: &[T], subject: &[T], ) -> SeqResult<Vec<Hsp>>

Search subject for high-scoring segment pairs anchored by exact k-mer seeds shared with query.

Returned HSPs are deduplicated (segments subsumed by a longer HSP on the same diagonal are dropped) and sorted by descending score, then by position for determinism.

Errors

SeqError::EmptyInput if either sequence is empty. Non-empty sequences shorter than one seed simply yield an empty result.

Trait Implementations

impl Clone for BlastAligner

fn clone(&self) -> BlastAligner

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for BlastAligner

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.