Struct BlastConfig 

pub struct BlastConfig {
    pub kmer_len: usize,
    pub match_score: i32,
    pub mismatch_score: i32,
    pub x_drop: i32,
}

Configuration for the seed-and-extend aligner.

Fields

kmer_len: usize

Length of the exact-match seed (k-mer). Must be > 0.

match_score: i32

Score awarded for each matching position.

mismatch_score: i32

Score (penalty, typically negative) for each mismatching position.

x_drop: i32

X-drop threshold: extension stops once the running score falls more than this far below the best score seen so far. Must be > 0.

Trait Implementations

impl Clone for BlastConfig

fn clone(&self) -> BlastConfig

Returns a duplicate of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Copy for BlastConfig

impl Debug for BlastConfig

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl Default for BlastConfig

fn default() -> Self

Returns the “default value” for a type.