Enum libradicl::rad_types::MappedFragmentOrientation

pub enum MappedFragmentOrientation {
    Reverse,
    Forward,
    ReverseReverse,
    ReverseForward,
    ForwardReverse,
    ForwardForward,
    Unknown,
}

Encodes the orientation of a mapped fragment. If the fragment is a single-end mapping (or orphan), then there are only 2 possible orientations, while for paired and mapped reads, there are 4 possible orientations. Finally, this enum can also represent an “Unknown” orientation.

Variants

Reverse

Forward

ReverseReverse

ReverseForward

ForwardReverse

ForwardForward

Unknown

Implementations

impl MappedFragmentOrientation

pub fn from_u32_paired_status(n: u32, m: MappingType) -> Self

Given an encoding of the mapped fragment information (n) and the corresponding MappingType, return the MappedFragmentOrientation

Trait Implementations

impl Clone for MappedFragmentOrientation

fn clone(&self) -> MappedFragmentOrientation

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MappedFragmentOrientation

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl From<MappedFragmentOrientation> for u32

For a given MappedFragmentOrientation, return the u32 that corresponds to this orientation.

fn from(item: MappedFragmentOrientation) -> Self

Converts to this type from the input type.

impl From<u32> for MappedFragmentOrientation

For a given u32, interpret it as a MappedFragmentOrientation, and return the appropriate variant.

fn from(item: u32) -> Self

Converts to this type from the input type.

impl Copy for MappedFragmentOrientation