Enum libradicl::rad_types::MappingType

pub enum MappingType {
    Unmapped,
    SingleMapped,
    MappedFirstOrphan,
    MappedSecondOrphan,
    MappedPair,
}

Represents the manner in which a fragment (read or read pair) may map to a target. This type does not encode orientation, but rather the mapping status.

Variants

Unmapped

SingleMapped

MappedFirstOrphan

MappedSecondOrphan

MappedPair

Implementations

impl MappingType

pub fn from_u8(t: u8) -> Self

convert from the u8 representation to the corresponding MappingType.

pub fn get_mask(&self) -> u32

Return the mask that is relevant given the current MappingType.

pub fn is_orphan(&self) -> bool

Returns true if the current MappingType is an orphan (i.e. a fragment paired in sequencing for which only a single end is mapped to the current target) and false otherwise.

Trait Implementations

impl Clone for MappingType

fn clone(&self) -> MappingType

Returns a copy of the value.

fn clone_from(&mut self, source: &Self)

Performs copy-assignment from source.

impl Debug for MappingType

fn fmt(&self, f: &mut Formatter<'_>) -> Result

Formats the value using the given formatter.

impl PartialEq for MappingType

fn eq(&self, other: &MappingType) -> bool

This method tests for self and other values to be equal, and is used by ==.

fn ne(&self, other: &Rhs) -> bool

This method tests for !=. The default implementation is almost always sufficient, and should not be overridden without very good reason.

impl Copy for MappingType

impl Eq for MappingType

impl StructuralPartialEq for MappingType